View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_44 (Length: 266)
Name: NF3813_low_44
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 43482931 - 43482681
Alignment:
| Q |
1 |
ttcatgtctgatgtattgccaaaactttgagnnnnnnntgtatcaaattttgagttgggccattggatatgtgccgcaatttgcagacaaggtaatacct |
100 |
Q |
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| T |
43482931 |
ttcatgtctgatgtatttccaaaactttgagaaaaaaatgtatcaaattttgagttgggccattggatatgtgccgcaatttgcagacaaggtaatacct |
43482832 |
T |
|
| Q |
101 |
tcaagccctgcaacataggtgcggggccatatgtcaggtctgtaaccagtttaccctgccatcacttcttagctacctcatccacttgtcaatgtctacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43482831 |
tcaagccctgcaacataggtgcggggccatatgtcaggtctgtaaccagtttaccctgccatcacttcttagctacctcatccacttgtcaatgtctacc |
43482732 |
T |
|
| Q |
201 |
ttttcacctggaaatatataaaacatttgtagtttgatttgtttaactttg |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43482731 |
ttttcacctggaaatatataaaacatttgtagtttgatttgtttaagtttg |
43482681 |
T |
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