View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_45 (Length: 261)
Name: NF3813_low_45
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 1251583 - 1251346
Alignment:
| Q |
14 |
aatactcaccataattcttgttgatgtaatttgggctatgatttcttatgatggaaaccaagttttggtttggaggaaagacnnnnnnnnnnnnngaact |
113 |
Q |
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| T |
1251583 |
aatactcaccataattcttgttgatgtaatttgggctatgatttcttatgatggaaaccaagttttggtttggaggaaaggaaaaaagaaaaaaagaact |
1251484 |
T |
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| Q |
114 |
ttcaatatcttagtaatttgtagagaggaattgaagagagaaagtaaagctagtgtttaatattgttttggtcttattcaaaaagtctacaaccaaacct |
213 |
Q |
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| T |
1251483 |
ttcaatatcttagtaatttgtagagaggaattgaagagagaaagtaaagctagtgtttaatattgttttggtcttattcaaaaagtctacaaccaaacct |
1251384 |
T |
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| Q |
214 |
aactccaaagccaaaccaaagaggaattgttgacctct |
251 |
Q |
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| T |
1251383 |
aactccaaagccaaaccaaagaggaattgttgacctct |
1251346 |
T |
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