View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_46 (Length: 256)
Name: NF3813_low_46
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 5300048 - 5300289
Alignment:
| Q |
13 |
agtgagatgaacaaaatgattagaaatgcaatacggatcagtcgccaaaattttgacccgatcacgaactnnnnnnncattaacaaatgctccaaggaca |
112 |
Q |
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| T |
5300048 |
agtgaaatgaacaaaatgattagaaatgcaatacggatcagtcgccaaaattctgacc-gatcacgaactaagaaaacattaacaaatgctccaaggaca |
5300146 |
T |
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| Q |
113 |
ttgtttaagcatttaaaagaaacannnnnnnnnn------atagaaaatgatgtaattactactttgacagatatttgacttatattttcatgacaattt |
206 |
Q |
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| T |
5300147 |
ttgtttaagcatttaaaagaaacattttttttttttttttatagaaaatgatgtaattactactttgacagatatttgacttatattttcaagacaattt |
5300246 |
T |
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| Q |
207 |
ttgttgaatatattcattaaacaatgtctttagagcatccaca |
249 |
Q |
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| T |
5300247 |
ttgttgaatatattccttaaacaatgtctttagagcatccaca |
5300289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 36563987 - 36563948
Alignment:
| Q |
92 |
ttaacaaatgctccaaggacattgtttaagcatttaaaag |
131 |
Q |
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| T |
36563987 |
ttaacaagtgctccaagggcattgtttaagcatttaaaag |
36563948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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