View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3813_low_49 (Length: 250)

Name: NF3813_low_49
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3813_low_49
NF3813_low_49
[»] chr3 (5 HSPs)
chr3 (10-169)||(41358787-41358946)
chr3 (182-249)||(41358594-41358661)
chr3 (189-249)||(41218351-41218411)
chr3 (189-244)||(33179109-33179164)
chr3 (189-249)||(53068323-53068383)
[»] chr2 (10 HSPs)
chr2 (189-248)||(17249394-17249453)
chr2 (189-245)||(33909325-33909381)
chr2 (189-245)||(25563011-25563067)
chr2 (189-249)||(12000599-12000659)
chr2 (182-249)||(16221020-16221087)
chr2 (189-249)||(304104-304164)
chr2 (201-249)||(17148868-17148916)
chr2 (182-217)||(39926369-39926404)
chr2 (201-244)||(45444450-45444493)
chr2 (190-244)||(15651284-15651338)
[»] chr1 (8 HSPs)
chr1 (189-249)||(24646128-24646188)
chr1 (189-248)||(34459184-34459243)
chr1 (187-245)||(6802080-6802138)
chr1 (189-245)||(9527120-9527176)
chr1 (189-249)||(24745487-24745547)
chr1 (189-248)||(49898451-49898510)
chr1 (189-249)||(4642050-4642110)
chr1 (190-238)||(4163481-4163528)
[»] chr8 (4 HSPs)
chr8 (189-248)||(13243169-13243228)
chr8 (189-248)||(39431643-39431702)
chr8 (189-249)||(34282877-34282937)
chr8 (214-246)||(31500808-31500840)
[»] chr7 (9 HSPs)
chr7 (184-245)||(41862342-41862403)
chr7 (189-249)||(3012385-3012445)
chr7 (189-249)||(4843379-4843439)
chr7 (189-249)||(19377470-19377530)
chr7 (189-249)||(28694020-28694080)
chr7 (189-248)||(21932760-21932819)
chr7 (189-249)||(21688190-21688250)
chr7 (190-249)||(38128973-38129032)
chr7 (189-244)||(814970-815025)
[»] chr5 (8 HSPs)
chr5 (189-249)||(13942748-13942808)
chr5 (189-249)||(8214632-8214692)
chr5 (182-249)||(767350-767417)
chr5 (189-248)||(16667463-16667522)
chr5 (189-247)||(15503991-15504049)
chr5 (189-245)||(21069084-21069140)
chr5 (189-249)||(17192638-17192698)
chr5 (189-249)||(12267378-12267438)
[»] chr4 (8 HSPs)
chr4 (189-249)||(49745115-49745175)
chr4 (182-249)||(36947587-36947654)
chr4 (189-249)||(25237652-25237712)
chr4 (201-248)||(52373826-52373873)
chr4 (190-248)||(50099917-50099975)
chr4 (189-250)||(41972416-41972477)
chr4 (201-249)||(2521911-2521959)
chr4 (189-245)||(8901879-8901934)
[»] chr6 (2 HSPs)
chr6 (189-249)||(2836180-2836240)
chr6 (189-249)||(34188858-34188918)
[»] scaffold0021 (1 HSPs)
scaffold0021 (202-249)||(112197-112244)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 41358946 - 41358787
Alignment:
Q  10 ataatactaaacaaaaattgaaacatttttcatgatctacatagtcattgcctaacattgtcgtttatttgctaagatctttgtattttcaataaatata 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358946 ataatactaaacaaaaattgaaacatttttcatgatctacatagtcattgcctaacattgtcgtttatttgctaagatctttgtattttcaataaatata 41358847  T
Q  110 tatttggacgcaactattaccattgtatttacaatctgggacggagccacccccagctag 169  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  41358846 tatttggacgcaactattaccattgtatttataatttgggacggagccacccccagctag 41358787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 41358661 - 41358594
Alignment:
Q  182 tcctacggattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358661 tcctgcggattttgccaatgatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 41358594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 41218411 - 41218351
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  41218411 gattttgccaagaatttaggttctcatgtgaggtaataccttaggattttaggatccgcag 41218351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 33179164 - 33179109
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatc 244  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||| |||||    
T  33179164 gattttgccaaggatttaggttcccaggtgaggtaataccataggattttaggatc 33179109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 53068323 - 53068383
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    |||||||||||  ||||||||||  ||||||| ||||||||||||||||| |||| |||||    
T  53068323 gattttgccaagaatttaggttcctaggtgagataataccttaggattttaggattcgcag 53068383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 17249394 - 17249453
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgca 248  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  17249394 gattttgccaaggatttaggttctcaggtgaggtaataccttaggattttaggatccgca 17249453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 33909381 - 33909325
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatcc 245  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  33909381 gatttttccaaagatttaggttctcaggtgaggtaataccataggattttaggatcc 33909325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 25563011 - 25563067
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatcc 245  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||    
T  25563011 gattttgccaaggatttaggttcccaggtgaggtaataccataggattttaggatcc 25563067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 12000599 - 12000659
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| ||| ||||| |  ||||||||||||||||||||||||| ||||||||||    
T  12000599 gattttgccaaggatataggtccctaggtgaggtaataccttaggattttaggatccgcag 12000659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 16221087 - 16221020
Alignment:
Q  182 tcctacggattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    |||| |||||||||| || |||||| |||| |||||||| ||||||||||||||||| ||||| ||||    
T  16221087 tcctgcggattttgctaaggatttaagttcccaggtgagataataccttaggattttaggatctgcag 16221020  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 304164 - 304104
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| ||||||||||| || ||||||||| ||| || |||||| ||||||||||    
T  304164 gattttgccaaggatttaggttcccatgtgaggtaacaccataagattttaggatccgcag 304104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 17148868 - 17148916
Alignment:
Q  201 gatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| ||||||||| |||||| ||||||||| ||||||||||    
T  17148868 gatttaggttcccaggtgagggaataccataggattttaggatccgcag 17148916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 39926404 - 39926369
Alignment:
Q  182 tcctacggattttgccaaagatttaggttctcaggt 217  Q
    |||||||||||||||||||||||| |||||||||||    
T  39926404 tcctacggattttgccaaagattttggttctcaggt 39926369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 45444493 - 45444450
Alignment:
Q  201 gatttaggttctcaggtgaggtaataccttaggatttttggatc 244  Q
    ||||||||||| |||||||||||||||| ||||||||| |||||    
T  45444493 gatttaggttcacaggtgaggtaataccataggattttaggatc 45444450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 15651284 - 15651338
Alignment:
Q  190 attttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatc 244  Q
    |||||||||| ||||||||| |  |||||||||||| |||||||||||| |||||    
T  15651284 attttgccaaggatttaggtccctaggtgaggtaatgccttaggattttaggatc 15651338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 24646128 - 24646188
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  24646128 gattttgccaaggatttaggttcccaggtgaggtaatacctttggatttttggatccgcag 24646188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 34459184 - 34459243
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgca 248  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  34459184 gattttgccaaggatttaagttctcaggtgaggtaataccttaggattttaggatccgca 34459243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 6802138 - 6802080
Alignment:
Q  187 cggattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatcc 245  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||    
T  6802138 cggattttgccaaggatttaggttcccaggtgaggtaataccttacgattttaggatcc 6802080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 9527120 - 9527176
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatcc 245  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||    
T  9527120 gattttgccaaggatttaggttcccaggtgaggtaatatcttaggattttaggatcc 9527176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 24745487 - 24745547
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| |||||||||| | ||||||||||||||| ||||||||| ||||||||||    
T  24745487 gattttgccaaggatttaggttttaaggtgaggtaataccctaggattttaggatccgcag 24745547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 49898451 - 49898510
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgca 248  Q
    ||||||||||| ||||||||| |  ||||||||||||||||||||||||| |||||||||    
T  49898451 gattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatccgca 49898510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 4642110 - 4642050
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||| ||| ||||||||||   ||||||||||||||||||||||||| ||||||||||    
T  4642110 gattttgtcaaggatttaggtttcgaggtgaggtaataccttaggattttaggatccgcag 4642050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 4163481 - 4163528
Alignment:
Q  190 attttgccaaagatttaggttctcaggtgaggtaataccttaggatttt 238  Q
    |||||||||| |||||||||| ||||||||| ||||||||||| |||||    
T  4163481 attttgccaaggatttaggtt-tcaggtgagataataccttagaatttt 4163528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 13243169 - 13243228
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgca 248  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  13243169 gattttgccaaggatttaggttcccaggtgaggtaataccttaggattttaggatccgca 13243228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 39431702 - 39431643
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgca 248  Q
    |||||||||||||||||||||||  ||||||||||||||| ||||||||| ||| |||||    
T  39431702 gattttgccaaagatttaggttcctaggtgaggtaataccataggattttcggacccgca 39431643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 34282937 - 34282877
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| |||||| ||||  ||||||||||||||| ||||||||| ||||||||||    
T  34282937 gattttgccaaggatttaagttccgaggtgaggtaataccataggattttaggatccgcag 34282877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 31500840 - 31500808
Alignment:
Q  214 aggtgaggtaataccttaggatttttggatccg 246  Q
    ||||||||||||||||||||||||| |||||||    
T  31500840 aggtgaggtaataccttaggattttaggatccg 31500808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 41862403 - 41862342
Alignment:
Q  184 ctacggattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatcc 245  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||    
T  41862403 ctacggattttgccaaggatttaggttctcagatgaggtattaccttaggattttaggatcc 41862342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 3012385 - 3012445
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| ||| ||||||| |||||||||||||||| ||||||||| ||||||||||    
T  3012385 gattttgccaaggatataggttcccaggtgaggtaataccataggattttaggatccgcag 3012445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 4843379 - 4843439
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| ||||||||||| ||||||||||||||| || ||||||| ||||||||||    
T  4843379 gattttgccaaggatttaggttcccaggtgaggtaatacattgggattttaggatccgcag 4843439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 19377470 - 19377530
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| ||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  19377470 gattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatccgcag 19377530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 28694080 - 28694020
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||| | ||||||||||| |||||||||||||||| ||||||||| ||||||||||    
T  28694080 gattttgcccaggatttaggttcccaggtgaggtaataccataggattttaggatccgcag 28694020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 21932819 - 21932760
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgca 248  Q
    ||||||| ||| ||||||||||  |||||||||||||||| |||||||||||||||||||    
T  21932819 gattttgtcaaggatttaggtttccaggtgaggtaataccataggatttttggatccgca 21932760  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 21688190 - 21688250
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    |||||||| || |||||||||| ||||||||| |||||||||||||||||  |||||||||    
T  21688190 gattttgcgaaggatttaggttatcaggtgagataataccttaggattttaagatccgcag 21688250  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 38129032 - 38128973
Alignment:
Q  190 attttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    |||||||||| ||||||||||| ||||||||| |||| | ||||||||| ||||||||||    
T  38129032 attttgccaaggatttaggttcccaggtgaggcaatatcataggattttaggatccgcag 38128973  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 815025 - 814970
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatc 244  Q
    |||||||||||  |||||||||| || ||||||||||||||||| ||||| |||||    
T  815025 gattttgccaagaatttaggttcccaagtgaggtaataccttagaattttaggatc 814970  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 13942808 - 13942748
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||    
T  13942808 gattttgccaaggatttagattatcaggtgaggtaataccttaggattttaggatccgcag 13942748  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 8214692 - 8214632
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||| ||| |||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  8214692 gattttgtcaaggatttaggttcttaggtgaggtaatactttaggattttaggatccgcag 8214632  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 767350 - 767417
Alignment:
Q  182 tcctacggattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    |||||| | ||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||| ||||    
T  767350 tcctacaggttttgccaaggatttagattcccaggtgaggtaataccttaggattttaggatctgcag 767417  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 16667522 - 16667463
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgca 248  Q
    ||||||||||| ||||||||||| || ||||||||||||| ||||||||| |||||||||    
T  16667522 gattttgccaaggatttaggttcccatgtgaggtaataccataggattttaggatccgca 16667463  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 15503991 - 15504049
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgc 247  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||||||| ||||||||    
T  15503991 gattttgccaaggatttaggttcccagatgaggtaataccataggattttaggatccgc 15504049  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 21069084 - 21069140
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatcc 245  Q
    |||||||||||||||||||||||  ||||||||| ||||| ||||||||| ||||||    
T  21069084 gattttgccaaagatttaggttcctaggtgaggttataccataggattttaggatcc 21069140  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 17192698 - 17192638
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||| ||| ||||||||||| ||| |||||||||||| | ||||||| ||||||||||    
T  17192698 gattttgtcaaggatttaggttcccagatgaggtaataccattggattttaggatccgcag 17192638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 12267438 - 12267378
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||   |||||| |||  ||||||||||||||| ||||||||| ||||||||||    
T  12267438 gattttgccacgaatttagattcgtaggtgaggtaataccataggattttaggatccgcag 12267378  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 49745115 - 49745175
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  49745115 gattttgccaaggatttaggttcctaggtgaggtaataccttaggattttaggatccgcag 49745175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 36947587 - 36947654
Alignment:
Q  182 tcctacggattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    |||| |||||||||||||  |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  36947587 tcctgcggattttgccaagaatttaggttcccaggtgtggtaataccttaggattttaggatccgcag 36947654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 25237652 - 25237712
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||| |||| |||||    
T  25237652 gattttgccaaggatttaggttcccaggtgaggtaataccttatgattttaggattcgcag 25237712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 52373826 - 52373873
Alignment:
Q  201 gatttaggttctcaggtgaggtaataccttaggatttttggatccgca 248  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  52373826 gatttaggttcccaggtgaggtaataccttaggattttaggatccgca 52373873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 50099917 - 50099975
Alignment:
Q  190 attttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgca 248  Q
    ||||||| || ||||||||||| ||||||| |||||||||||||||||| |||||||||    
T  50099917 attttgctaaggatttaggttcccaggtgaagtaataccttaggattttaggatccgca 50099975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 41972477 - 41972416
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcaga 250  Q
    ||||||||||| |||| |||||| |||||||||||||| |||| |||||| |||||||||||    
T  41972477 gattttgccaaggattaaggttcccaggtgaggtaatatcttaagattttaggatccgcaga 41972416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 2521959 - 2521911
Alignment:
Q  201 gatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||||||    
T  2521959 gatttaggttcccaggtgaggtaatatcttaggattttaggatccgcag 2521911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 8901879 - 8901934
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatcc 245  Q
    ||||||||||| ||||||| ||  ||| |||||||||||||||||||||| ||||||    
T  8901879 gattttgccaaggatttagatttccag-tgaggtaataccttaggattttaggatcc 8901934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 2836240 - 2836180
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    ||||||| ||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||    
T  2836240 gattttgtcaaggatttaggttcccaggtgaggtaataccataggattttaggatccgcag 2836180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 34188858 - 34188918
Alignment:
Q  189 gattttgccaaagatttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    |||||| |||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  34188858 gattttaccaatgatttagattctcaggtgaagtaataccttaggattttaggatccgcag 34188918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 112244 - 112197
Alignment:
Q  202 atttaggttctcaggtgaggtaataccttaggatttttggatccgcag 249  Q
    |||||||||| ||| |||||||||||| ||||||||| ||||||||||    
T  112244 atttaggttcccagatgaggtaataccataggattttaggatccgcag 112197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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