View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3813_low_5 (Length: 623)

Name: NF3813_low_5
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3813_low_5
NF3813_low_5
[»] chr8 (15 HSPs)
chr8 (19-458)||(15804642-15805081)
chr8 (19-485)||(15763610-15764073)
chr8 (19-389)||(15799028-15799398)
chr8 (19-296)||(15812428-15812705)
chr8 (21-238)||(15696473-15696690)
chr8 (19-291)||(15721764-15722036)
chr8 (51-260)||(15703103-15703312)
chr8 (30-235)||(15710695-15710900)
chr8 (417-518)||(15812773-15812874)
chr8 (565-613)||(15812910-15812958)
chr8 (577-615)||(15805081-15805119)
chr8 (568-613)||(15799527-15799572)
chr8 (582-613)||(15697033-15697064)
chr8 (68-118)||(15692125-15692175)
chr8 (581-613)||(15722253-15722285)
[»] chr3 (4 HSPs)
chr3 (76-141)||(4547202-4547267)
chr3 (76-133)||(3095672-3095729)
chr3 (105-151)||(3132489-3132535)
chr3 (76-133)||(3081235-3081292)


Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 15804642 - 15805081
Alignment:
Q  19 ctggttgcgtgggttttggaaggtctactgtctcactccctagcatgctaacaacggtggacatggttggtcgatctgcggcatcttcttgtacacacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |     
T  15804642 ctggttgcgtgggttttggaaggtctactgtctcactccctagcatgctaacaacggtggacatggttggtcgatctgctgcatcttcttgtacacaaag 15804741  T
Q  119 taaaccaatgtgtatacacttcaagacttcactttcaatgtatgtcttttggtggaatgggtcgattaattctaaactttttccttcacaccagagtttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15804742 taaaccaatgtgtatacacttcaagacttcactttcaatgtacattttttggtggaatggatcgattaattctaaactttttccttcacaccagagtttc 15804841  T
Q  219 caagtctgcatataaatatggattattagacacttgagttgatacattttgttagaaaaagtaaaaatacattagtgtcatcataaatttttgaatagtt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15804842 caagtctgcatataaatatggattattagacacttgagttgatacattttgttagaaaaagtacaaatacattagtgtcatcataaatttttgaatagtt 15804941  T
Q  319 ggcgcacgatatgctattagacccatatgaccaagtcatctgaaatttcagatgtgctacccatgtgttttcctaagcaagatcgaggtagtaagctttg 418  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  15804942 ggcgcatgatatgctattagacccatatgaccaagtcatctgaaatttcagatgtgctaccgatgtgttttcctaagcaagatcgaggtagcaagctttg 15805041  T
Q  419 tttatacattatcaatattttgtaaccaagagcctctcaa 458  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  15805042 tttatacattatcaatattttgtaaccaagagcctatcaa 15805081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 485
Target Start/End: Original strand, 15763610 - 15764073
Alignment:
Q  19 ctggttgcgtgggttttggaaggtctactgtctcactccctagcatgctaacaacggtggacatggttggtcgatctgcggcatcttcttgtacacacaa 118  Q
    |||||||  |||||| ||||||  ||||||| |||||||||||||| | ||| || ||||| ||||||||||||||||| ||||||||||||||||||||    
T  15763610 ctggttgattgggttgtggaagagctactgtatcactccctagcatacgaacgacagtggaaatggttggtcgatctgctgcatcttcttgtacacacaa 15763709  T
Q  119 taaaccaatgtgtatacacttcaagacttcactttcaatgtatgtcttttggtggaatgggtcgattaattctaaactttttccttcacaccagagtttc 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||||    
T  15763710 taaaccaatgtgtatacacttcaagacttcactttcaatgtacgtcttttggtgaaatggatcgattaattctatactttttccttcacaccaaagtttc 15763809  T
Q  219 caagtctgcatataaatatggattattagacacttgagttgatacattttgttagaaaaagtaaaaatacattagtgtcatcataaatttttgaatagtt 318  Q
    |||||||||| | ||||||||||  ||||||||||||||||| ||||| ||||| |||| || ||| || ||||||| |||||||  |||||||||||||    
T  15763810 caagtctgcacacaaatatggatatttagacacttgagttgaaacattatgttaaaaaatgttaaagtaaattagtgccatcatagctttttgaatagtt 15763909  T
Q  319 ggcgcacgatatgctattagacccatatgaccaagtcatctgaaatttcagatgtgctacccatgtgttttcctaagcaagatcgaggtagtaagctttg 418  Q
    ||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| | | | ||||    
T  15763910 ggctcatgatatgctattagacccctatgaccaagtcatctgaaatttcagatgtgctacccatgtgtttttctaagctagatcaaggttgcatggtttg 15764009  T
Q  419 tttatacattatcaatattttgtaaccaagagcctctcaattaaaggcagtgttagtgatttcataa 485  Q
    |||||   ||||||||||||||||  || |||||||||| ||||||| | |||||  ||||||||||    
T  15764010 tttat---ttatcaatattttgtactcaggagcctctcatttaaagggaatgttaaagatttcataa 15764073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 15799028 - 15799398
Alignment:
Q  19 ctggttgcgtgggttttggaaggtctactgtctcactccctagcatgctaacaacggtggacatggttggtcgatctgcggcatcttcttgtacacacaa 118  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |     
T  15799028 ctggttgcgtgggtttcggaaggtctactgtgtcactccctagcatgcgaacaacggtggacatcgttggtcgatctgctgcatcttcttgtacacaaag 15799127  T
Q  119 taaaccaatgtgtatacacttcaagacttcactttcaatgtatgtcttttggtggaatgggtcgattaattctaaactttttccttcacaccagagtttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||    
T  15799128 taaaccaatgtgtatacacttcaagacttcactttcaatgtatgttttttggtggaatggatcgattaattccaaacatttcccttcacaccagagtttc 15799227  T
Q  219 caagtctgcatataaatatggattattagacacttgagttgatacattttgttagaaaaagtaaaaatacattagtgtcatcataaatttttgaatagtt 318  Q
    |||||||||||| ||||||||||  ||||||||||||||||| | ||||||||||||||  |||||||| |||||||  ||||||| |||||  ||||||    
T  15799228 caagtctgcatacaaatatggatatttagacacttgagttga-atattttgttagaaaatttaaaaatatattagtgctatcataacttttttgatagtt 15799326  T
Q  319 ggcgcacgatatgctattaga-cccatatgaccaagtcatctgaaatttcagatgtgctacccatgtgtttt 389  Q
     |  ||   |||||||||||| ||||||||||||||| ||| |||| | ||||  |||||||||||| ||||    
T  15799327 aggtcatactatgctattagatcccatatgaccaagtaatccgaaagtacagagttgctacccatgtatttt 15799398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 15812428 - 15812705
Alignment:
Q  19 ctggttgcgtgggttttggaaggtctactgtctcactccctagcatgctaacaacggtggacatggttggtcgatctgcggcatcttcttgtacacacaa 118  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||| | |||||| || ||||||||||| |||||    
T  15812428 ctggttgtgtgggttttggaaggtctactgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaa 15812527  T
Q  119 taaaccaatgtgtatacacttcaagacttcactttcaatgtatgtcttttggtggaatgggtcgattaattctaaactttttccttcacaccagagtttc 218  Q
    |||||||||||| |||||||||| ||||||||| ||||  || || |||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15812528 taaaccaatgtgaatacacttcatgacttcactctcaacatacgtttttttgtggaatggatcgattaattctaaactttttccttcacaccagagtttc 15812627  T
Q  219 caagtctgcatataaatatggattattagacacttgagttgatacattttgttagaaaaagtaaaaatacattagtgt 296  Q
    |||||||||| |  |||||||||  ||||| ||||||||||| ||||||||| ||| || ||||||||||||||||||    
T  15812628 caagtctgcaaacgaatatggatatttagaaacttgagttgaaacattttgtcagataatgtaaaaatacattagtgt 15812705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 15696473 - 15696690
Alignment:
Q  21 ggttgcgtgggttttggaaggtctactgtctcactccctagcatgctaacaacggtggacatggttggtcgatctgcggcatcttcttgtacacacaata 120  Q
    |||||| |||||||||||| |   | ||| ||||| ||||||||   ||| || ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  15696473 ggttgcttgggttttggaatgggcattgtgtcactgcctagcatagcaacgaccgtggacatggttggtcgatctgcagcatcttgttgtacacacaata 15696572  T
Q  121 aaccaatgtgtatacacttcaagacttcactttcaatgtatgtcttttggtggaatgggtcgattaattctaaactttttccttcacaccagagtttcca 220  Q
    ||||||||||||| |||||||  || ||||||||||||||||  |||| ||||| ||| || |||||||| || ||||||||||||||||| || |||||    
T  15696573 aaccaatgtgtatgcacttcataacctcactttcaatgtatgattttttgtggattggatctattaattccaagctttttccttcacaccaaagcttcca 15696672  T
Q  221 agtctgcatataaatatg 238  Q
    |||||||||| |||||||    
T  15696673 agtctgcatacaaatatg 15696690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 15721764 - 15722036
Alignment:
Q  19 ctggttgcgtgggttttggaaggtctactgtctcactccctagcatgctaacaacggtggacatggttggtcgatctgcggcatcttcttgtacacacaa 118  Q
    ||||| || |||| |||||||||  || ||| ||||| |||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  15721764 ctggtggcttgggatttggaagggttattgtgtcactacctagcatgacaacaacggtggacattgttggtcgatctgctgcatcttcttgtacacacaa 15721863  T
Q  119 taaaccaatgtgtatacacttcaagacttcactttcaatgtatgtcttttggtggaatgggtcgattaattctaaactttttccttcacaccagagtttc 218  Q
    |||||| |||||||| || ||||  |||||||||||||||||||  | || ||||| ||| | ||||  ||| || | ||||||||||||||| ||| ||    
T  15721864 taaacctatgtgtatgcatttcattacttcactttcaatgtatgattctttgtggattggatggattttttccaagcattttccttcacaccaaagtctc 15721963  T
Q  219 caagtctgcatataaatatggattattagacacttgagttgatacattttgttagaaaaagtaaaaatacatt 291  Q
    || ||||||||| || |||| ||  |||||||||||| |||  ||||||||| ||||||  ||||||| ||||    
T  15721964 catgtctgcatacaattatgaatatttagacacttgaattggaacattttgtcagaaaatctaaaaatccatt 15722036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 51 - 260
Target Start/End: Original strand, 15703103 - 15703312
Alignment:
Q  51 tcactccctagcatgctaacaacggtggacatggttggtcgatctgcggcatcttcttgtacacacaataaaccaatgtgtatacacttcaagacttcac 150  Q
    ||||| |||||||||  ||| |||||||||||||||||||||||||| |||||||||||||  |||||||||||| ||||||| ||   ||  || ||||    
T  15703103 tcacttcctagcatgagaacgacggtggacatggttggtcgatctgctgcatcttcttgtatgcacaataaaccattgtgtatgcatcgcagaacctcac 15703202  T
Q  151 tttcaatgtatgtcttttggtggaatgggtcgattaattctaaactttttccttcacaccagagtttccaagtctgcatataaatatggattattagaca 250  Q
    ||||||||||||  | || ||||| ||| || |||| ||| |||||||||| ||| ||||| ||||||||||||||||||||  |||| || ||||| ||    
T  15703203 tttcaatgtatgattctttgtggattggatctattatttccaaactttttctttcgcaccaaagtttccaagtctgcatatagttatgaataattagtca 15703302  T
Q  251 cttgagttga 260  Q
    ||||||||||    
T  15703303 cttgagttga 15703312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 15710695 - 15710900
Alignment:
Q  30 ggttttggaaggtctactgtctcactccctagcatgctaacaacggtggacatggttggtcgatctgcggcatcttcttgtacacacaataaaccaatgt 129  Q
    |||||||||||| | | ||| || || |||||||||  ||||| |||||||||||||||||||||||| || ||||| || |||||||||||||| ||||    
T  15710695 ggttttggaaggaccattgtgtcgctgcctagcatgagaacaatggtggacatggttggtcgatctgcagcgtcttcctgcacacacaataaaccgatgt 15710794  T
Q  130 gtatacacttcaagacttcactttcaatgtatgtcttttggtggaatgggtcgattaattctaaactttttccttcacaccagagtttccaagtctgcat 229  Q
    |||  |||||||  ||||||||||| |||||||  |||   |||| ||| || |  |||||  ||||||| ||||||| ||| |||||||||||||||||    
T  15710795 gtacgcacttcataacttcactttcgatgtatgattttctttggattggatcaacgaattcccaacttttaccttcaccccatagtttccaagtctgcat 15710894  T
Q  230 ataaat 235  Q
    | ||||    
T  15710895 acaaat 15710900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 417 - 518
Target Start/End: Original strand, 15812773 - 15812874
Alignment:
Q  417 tgtttatacattatcaatattttgtaaccaagagcctctcaattaaaggcagtgttagtgatttcataaaaatataaaactatttttggcttggagtact 516  Q
    ||||||||||||||||||||||  ||  |||||| |||||  || |||||| ||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  15812773 tgtttatacattatcaatatttcatattcaagagactctcctttgaaggcaatgttagtgatttcataaaactataaaacaatttttggcttggaatact 15812872  T
Q  517 tg 518  Q
    ||    
T  15812873 tg 15812874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 565 - 613
Target Start/End: Original strand, 15812910 - 15812958
Alignment:
Q  565 atgagatgtgataaagaaaactcacatataatagaagactttgcctatg 613  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  15812910 atgagatgtgataaggaaaacttacatataatagaagactttgcatatg 15812958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 577 - 615
Target Start/End: Original strand, 15805081 - 15805119
Alignment:
Q  577 aaagaaaactcacatataatagaagactttgcctatgct 615  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  15805081 aaagaaaactcacatataatagaagactttgcatatgct 15805119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 15799527 - 15799572
Alignment:
Q  568 agatgtgataaagaaaactcacatataatagaagactttgcctatg 613  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  15799527 agatgtgataaggaaaactcacatatagtagaagactttgcatatg 15799572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 582 - 613
Target Start/End: Original strand, 15697033 - 15697064
Alignment:
Q  582 aaactcacatataatagaagactttgcctatg 613  Q
    ||||||||||||||||||||||||||||||||    
T  15697033 aaactcacatataatagaagactttgcctatg 15697064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 15692125 - 15692175
Alignment:
Q  68 aacaacggtggacatggttggtcgatctgcggcatcttcttgtacacacaa 118  Q
    |||||| || ||||||||||||| |||||| ||||||||||| ||||||||    
T  15692125 aacaacagttgacatggttggtctatctgccgcatcttcttgaacacacaa 15692175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 613
Target Start/End: Original strand, 15722253 - 15722285
Alignment:
Q  581 aaaactcacatataatagaagactttgcctatg 613  Q
    ||||||||||| |||||||||||||||||||||    
T  15722253 aaaactcacatgtaatagaagactttgcctatg 15722285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 4547202 - 4547267
Alignment:
Q  76 tggacatggttggtcgatctgcggcatcttcttgtacacacaataaaccaatgtgtatacacttca 141  Q
    ||||||||||||||| |||  | |||||||||||||||||||| |||||||| |||||||||||||    
T  4547202 tggacatggttggtctatccactgcatcttcttgtacacacaacaaaccaatatgtatacacttca 4547267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 3095729 - 3095672
Alignment:
Q  76 tggacatggttggtcgatctgcggcatcttcttgtacacacaataaaccaatgtgtat 133  Q
    ||||||||||||||| |||  | |||||||||||||||||||| ||||||||||||||    
T  3095729 tggacatggttggtctatccactgcatcttcttgtacacacaacaaaccaatgtgtat 3095672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 3132489 - 3132535
Alignment:
Q  105 tcttgtacacacaataaaccaatgtgtatacacttcaagacttcact 151  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||    
T  3132489 tcttgtacacacaataggccaatgtgtatacacttcaaaacttcact 3132535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 3081292 - 3081235
Alignment:
Q  76 tggacatggttggtcgatctgcggcatcttcttgtacacacaataaaccaatgtgtat 133  Q
    ||||||||||||||| |||  | ||||||||||||||||| || ||||||||||||||    
T  3081292 tggacatggttggtctatccactgcatcttcttgtacacataacaaaccaatgtgtat 3081235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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