View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_52 (Length: 246)
Name: NF3813_low_52
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_52 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 44 - 246
Target Start/End: Original strand, 43962239 - 43962441
Alignment:
| Q |
44 |
atacctaggaatgacacagagctaaagcccaagtattcttttgttgtgactctaagaatacttttcagcattttgggtgctgtcatgcttggaaccttag |
143 |
Q |
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| T |
43962239 |
atacctaggaatgacacagagctaaagcccaagtattcttttgttgtgactctaagaatacttttcagcattttgggtgctgtcatgcttggaaccttag |
43962338 |
T |
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| Q |
144 |
ggtacacgcttgtcaccgatggttctcctttccgtatagaacttttgacttcgtaagggcttcatatttgttattattattcttgatgttatccctattg |
243 |
Q |
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| T |
43962339 |
ggtacacgcttgtcaccgatggttctcctttccgtatagaacttttgacttcgtaagggcttcatatttgttattattattcttgatgttatccctattg |
43962438 |
T |
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| Q |
244 |
tcg |
246 |
Q |
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||| |
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| T |
43962439 |
tcg |
43962441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 43955866 - 43955992
Alignment:
| Q |
74 |
aagtattcttttgttgtgactctaagaatacttttcagcattttgggtgctgtcatgcttggaaccttagggtacacgcttgtcaccgatggttctcctt |
173 |
Q |
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| T |
43955866 |
aagtgttctattgttgcgactctaagaatccttttcggcattttgggtgttgtcatgcttggaaccttggtatacactcttgtcactgatggttctcctt |
43955965 |
T |
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| Q |
174 |
tccgtatagaacttttgacttcgtaag |
200 |
Q |
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| T |
43955966 |
tccgtacagagctattgactccgtaag |
43955992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 43430930 - 43430814
Alignment:
| Q |
84 |
ttgttgtgactctaagaatacttttcagcattttgggtgctgtcatgcttggaaccttagggtacacgcttgtcaccgatggttctcctttccgtataga |
183 |
Q |
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| T |
43430930 |
ttgttgcgactttaaaaatccttttcagcattttgggtgttgttatgcttggaactttaatatacattcttgtcactgatggttctcctttccgtacaga |
43430831 |
T |
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| Q |
184 |
acttttgacttcgtaag |
200 |
Q |
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| T |
43430830 |
gctattgacttcgtaag |
43430814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 51208493 - 51208437
Alignment:
| Q |
85 |
tgttgtgactctaagaatacttttcagcattttgggtgctgtcatgcttggaacctt |
141 |
Q |
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| T |
51208493 |
tgttgcgactttaagaatccttttcagcattttgggtgttgttatgcttggaacctt |
51208437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 179
Target Start/End: Original strand, 6255313 - 6255408
Alignment:
| Q |
84 |
ttgttgtgactctaagaatacttttcagcattttgggtgctgtcatgcttggaaccttagggtacacgcttgtcaccgatggttctcctttccgta |
179 |
Q |
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| T |
6255313 |
ttgttgcgactttaagaatccttttcagcattttgggtgttgttatgcttggaacctttatatacactcttgtcactgatggttctcctttccgta |
6255408 |
T |
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