View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3813_low_6 (Length: 607)

Name: NF3813_low_6
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3813_low_6
NF3813_low_6
[»] chr7 (17 HSPs)
chr7 (14-592)||(39620911-39621489)
chr7 (344-503)||(39563299-39563458)
chr7 (344-476)||(39573908-39574040)
chr7 (344-494)||(39537183-39537333)
chr7 (28-208)||(39588098-39588278)
chr7 (344-494)||(39354379-39354529)
chr7 (28-100)||(39573591-39573663)
chr7 (59-100)||(1083597-1083638)
chr7 (59-100)||(39339875-39339916)
chr7 (59-100)||(39354696-39354737)
chr7 (59-100)||(39546290-39546331)
chr7 (59-100)||(39563083-39563124)
chr7 (344-396)||(39546643-39546695)
chr7 (344-494)||(39339538-39339688)
chr7 (342-476)||(39588384-39588518)
chr7 (59-96)||(39367301-39367338)
chr7 (171-212)||(39573734-39573775)
[»] chr4 (2 HSPs)
chr4 (51-100)||(2896130-2896179)
chr4 (51-100)||(2888188-2888237)


Alignment Details
Target: chr7 (Bit Score: 558; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 14 - 592
Target Start/End: Original strand, 39620911 - 39621489
Alignment:
Q  14 atagaggcaacggctgtgaagagaaatcttaatgcattgtatcgcggattccgccagtaagaccaatgttgtttccataagcaagccttgaattgagcga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39620911 atagaggcaacggctgtgaagagaaatcttaatgcattgtatcgcggattccgccagtaagaccaatgttgtttccataagcaagccttgaattgagcga 39621010  T
Q  114 aaaggggtcttgagtattttgaaggaaaacgaagattcacagaatcaggagctggaatgctcaattctacaataagagctttgtttctcctaaaacaaac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621011 aaaggggtcttgagtattttgaaggaaaacgaagattcacagaatcaggagctggaatgctcaattctacaataagagctttgtttctcctaaaacaaac 39621110  T
Q  214 accacaggtgtcatttcacatcagcaaattttaaatgacnnnnnnngaaagagagacttatacttattttccatcaaattgctttctttagtattatttt 313  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621111 accacaggtgtcatttcacatcagcaaattttaaatgacaaaaaaagaaagagagacttatacttattttccatcaaattgctttctttagtattatttt 39621210  T
Q  314 ctggatcagtctcagactttatagaattgcaaatacctgtataattctgaatttttgtacacttcagaaaaatcaatctccaattgcatttctttttctg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621211 ctggatcagtctcagactttatagaattgcaaatacctgtataattctgaatttttgtacacttcagaaaaatcaatctccaattgcatttctttttctg 39621310  T
Q  414 aagaagtaatttccaacatccaagctgctgggttacaaccatcttcaatcttactgacaccttcaatccccttcaagacaaaagtgtgtatgcaaatgca 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621311 aagaagtaatttccaacatccaagctgctgggttacaaccatcttcaatcttactgacaccttcaatccccttcaagacaaaagtgtgtatgcaaatgca 39621410  T
Q  514 atttttagccaaattaagttcatagtaatagaacatgcacttcaaatataaaattttcatcacaattctacctcaaaat 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621411 atttttagccaaattaagttcatagtaatagaacatgcacttcaaatataaaattttcatcacaattctacctcaaaat 39621489  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 344 - 503
Target Start/End: Original strand, 39563299 - 39563458
Alignment:
Q  344 aaatacctgtataattctgaatttttgtacacttcagaaaaatcaatctccaattgcatttctttttctgaagaagtaatttccaacatccaagctgctg 443  Q
    |||||||||||||| |||||||||| |||||| || | |||||||||| |||||| | ||||||||  |||||  || | |||||||||||| | |||||    
T  39563299 aaatacctgtataactctgaattttggtacacctctgcaaaatcaatccccaattccctttcttttgatgaagttgtgacttccaacatccatgttgctg 39563398  T
Q  444 ggttacaaccatcttcaatcttactgacaccttcaatccccttcaagacaaaagtgtgta 503  Q
    | ||| |||| |||| |||||| || ||||| |  |||||||||||||||||||||||||    
T  39563399 gattataaccgtctttaatcttgctaacaccatggatccccttcaagacaaaagtgtgta 39563458  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 344 - 476
Target Start/End: Original strand, 39573908 - 39574040
Alignment:
Q  344 aaatacctgtataattctgaatttttgtacacttcagaaaaatcaatctccaattgcatttctttttctgaagaagtaatttccaacatccaagctgctg 443  Q
    ||||||||||| ||||||||  |||||||||| |||| ||||| |||||||| || |||||||||| ||||   ||||| |||||||||||||| |||||    
T  39573908 aaatacctgtacaattctgagcttttgtacacctcagcaaaattaatctccatttccatttcttttgctgagctagtaacttccaacatccaagttgctg 39574007  T
Q  444 ggttacaaccatcttcaatcttactgacacctt 476  Q
    | ||  | ||||||| || ||||||||||||||    
T  39574008 gattgtagccatctttaagcttactgacacctt 39574040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 344 - 494
Target Start/End: Original strand, 39537183 - 39537333
Alignment:
Q  344 aaatacctgtataattctgaatttttgtacacttcagaaaaatcaatctccaattgcatttctttttctgaagaagtaatttccaacatccaagctgctg 443  Q
    |||||||||||||| ||||||||||||||||| || | |||||||||| |||||| | |||||||   |||||  || | |||||||||||| | |||||    
T  39537183 aaatacctgtataactctgaatttttgtacacctctgcaaaatcaatccccaattccctttctttagatgaagtggtgacttccaacatccatgttgctg 39537282  T
Q  444 ggttacaaccatcttcaatcttactgacaccttcaatccccttcaagacaa 494  Q
    | ||| |||| | || |||||| || |||||||  || |||||||||||||    
T  39537283 gattataaccgtatttaatcttgctaacaccttttattcccttcaagacaa 39537333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 39588098 - 39588278
Alignment:
Q  28 tgtgaagagaaatcttaatgcattgtatcgcggattccgccagtaagaccaatgttgtttccataagcaagccttgaattg---agcgaaaaggggtctt 124  Q
    |||||||||||| ||||  ||||||||  | || || ||||||||||||||||||||||||||||| |||| | | |||||   ||||||   ||  ||     
T  39588098 tgtgaagagaaaccttatggcattgtacagagggttgcgccagtaagaccaatgttgtttccataaacaagtcataaattggacagcgaa---ggaccta 39588194  T
Q  125 gagtattttgaaggaaaacgaagattcaca-gaatcaggagctggaatgctcaattctacaataagagctttgtttctcctaaaa 208  Q
    ||||| ||||||||||||| ||| ||||   |||  |||||||||| |||||||||||  |||||||||||||||||||||||||    
T  39588195 gagtactttgaaggaaaacaaag-ttcatttgaaaaaggagctggagtgctcaattcttgaataagagctttgtttctcctaaaa 39588278  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 344 - 494
Target Start/End: Complemental strand, 39354529 - 39354379
Alignment:
Q  344 aaatacctgtataattctgaatttttgtacacttcagaaaaatcaatctccaattgcatttctttttctgaagaagtaatttccaacatccaagctgctg 443  Q
    |||||||||||||| ||||||||||||||||  || | |||||||||| |||||| | |||||||   |||||  || | |||||||||||| | |||||    
T  39354529 aaatacctgtataactctgaatttttgtacaactctgcaaaatcaatccccaattccctttctttagatgaagttgtgacttccaacatccatgttgctg 39354430  T
Q  444 ggttacaaccatcttcaatcttactgacaccttcaatccccttcaagacaa 494  Q
    | ||| |||| ||||  ||||| || |||||||  || |||||||||||||    
T  39354429 gattataaccgtctttgatctttctaacaccttggattcccttcaagacaa 39354379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 39573591 - 39573663
Alignment:
Q  28 tgtgaagagaaatcttaatgcattgtatcgcggattccgccagtaagaccaatgttgtttccataagcaagcc 100  Q
    |||||||| ||| |||| || ||||||   |||||| ||||||||||||||||||||||||||||| ||||||    
T  39573591 tgtgaagataaaccttattgaattgtacaacggattgcgccagtaagaccaatgttgtttccataaacaagcc 39573663  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 1083597 - 1083638
Alignment:
Q  59 ggattccgccagtaagaccaatgttgtttccataagcaagcc 100  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  1083597 ggattgcgccagtaagaccaatgttgtttccataaacaagcc 1083638  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 39339916 - 39339875
Alignment:
Q  59 ggattccgccagtaagaccaatgttgtttccataagcaagcc 100  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  39339916 ggattgcgccaataagaccaatgttgtttccataagcaagcc 39339875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 39354737 - 39354696
Alignment:
Q  59 ggattccgccagtaagaccaatgttgtttccataagcaagcc 100  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  39354737 ggattgcgccaataagaccaatgttgtttccataagcaagcc 39354696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 39546290 - 39546331
Alignment:
Q  59 ggattccgccagtaagaccaatgttgtttccataagcaagcc 100  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  39546290 ggattgcgccagtaagaccaatgttgtttccataaacaagcc 39546331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 39563083 - 39563124
Alignment:
Q  59 ggattccgccagtaagaccaatgttgtttccataagcaagcc 100  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  39563083 ggattgcgccaataagaccaatgttgtttccataagcaagcc 39563124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 39546643 - 39546695
Alignment:
Q  344 aaatacctgtataattctgaatttttgtacacttcagaaaaatcaatctccaa 396  Q
    |||||||||||||| ||||||||||||||||| || | |||||||||| ||||    
T  39546643 aaatacctgtataaatctgaatttttgtacacctctgcaaaatcaatccccaa 39546695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 494
Target Start/End: Complemental strand, 39339688 - 39339538
Alignment:
Q  344 aaatacctgtataattctgaatttttgtacacttcagaaaaatcaatctccaattgcatttctttttctgaagaagtaatttccaacatccaagctgctg 443  Q
    |||||||||||||| ||||||||||||||||  ||   |||||||||| |||||| || ||||||   ||||   || | |||||||||||| | |||||    
T  39339688 aaatacctgtataactctgaatttttgtacaactctacaaaatcaatccccaattccacttctttagatgaatttgtgacttccaacatccatgttgctg 39339589  T
Q  444 ggttacaaccatcttcaatcttactgacaccttcaatccccttcaagacaa 494  Q
    | ||| |||| ||||  ||||| || |||||||  || ||||||| |||||    
T  39339588 gattataaccgtctttgatcttgctaacaccttggattcccttcatgacaa 39339538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 476
Target Start/End: Original strand, 39588384 - 39588518
Alignment:
Q  342 gcaaatacctgtataattctgaatttttgtacacttcagaaaaatcaatctccaattgcatttctttttctgaagaagtaatttccaacatccaagctgc 441  Q
    |||||||||||||||||  ||||||| ||||||| |||| |||||||| | | ||||  | ||||||   ||||| ||| | |||||| ||||||| |||    
T  39588384 gcaaatacctgtataatgttgaatttatgtacacctcagcaaaatcaacccctaattctaattctttagatgaagtagtgacttccaaaatccaagttgc 39588483  T
Q  442 tgggttacaaccatcttcaatcttactgacacctt 476  Q
    ||| ||| | ||||||| ||| ||||  |||||||    
T  39588484 tggattatatccatctttaatgttacctacacctt 39588518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 39367338 - 39367301
Alignment:
Q  59 ggattccgccagtaagaccaatgttgtttccataagca 96  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  39367338 ggattgcgccaataagaccaatgttgtttccataagca 39367301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 39573734 - 39573775
Alignment:
Q  171 tgctcaattctacaataagagctttgtttctcctaaaacaaa 212  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||    
T  39573734 tgctcaaatcttcaataagagctttgtttctcctataacaaa 39573775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 2896130 - 2896179
Alignment:
Q  51 tgtatcgcggattccgccagtaagaccaatgttgtttccataagcaagcc 100  Q
    ||||| ||||||| |||||||| ||||||||||||||||||| |||||||    
T  2896130 tgtatggcggattgcgccagtatgaccaatgttgtttccataggcaagcc 2896179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 2888237 - 2888188
Alignment:
Q  51 tgtatcgcggattccgccagtaagaccaatgttgtttccataagcaagcc 100  Q
    ||||| |||| || ||||| || |||||||||||||||||||||||||||    
T  2888237 tgtatggcgggttgcgccaatatgaccaatgttgtttccataagcaagcc 2888188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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