View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_62 (Length: 236)
Name: NF3813_low_62
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 7895421 - 7895643
Alignment:
| Q |
17 |
agtttgcaactacaaaattttggattttgcgttggt-------------ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaatt |
103 |
Q |
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| T |
7895421 |
agtttgcaactacaaaattttggattttgcgttggtgataattatcgtgccgagccattttcaacttttaacaagttgaatagtttgctccttaccaatt |
7895520 |
T |
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| Q |
104 |
gtaccttgaatcgtgcaggaacccttcgcatatcaagtgtgacgcttgttaattttactatgtataatcgttttcatagattttacaagtaattccacat |
203 |
Q |
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| T |
7895521 |
gtaccttgaatcgtgtaggaactctttgcatatcaagtgtgacccttgttaattttactatgtataatcgttttcatagattttacaagtaattccacat |
7895620 |
T |
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| Q |
204 |
caaaaggagcctcctttgcttct |
226 |
Q |
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| T |
7895621 |
caaaaggagcctcctttgtttct |
7895643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 7976419 - 7976298
Alignment:
| Q |
55 |
gagccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaatcgtgcaggaacccttcgcatatcaagtgtgacgcttgtta |
154 |
Q |
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| T |
7976419 |
gagcctttttcgacatttaacaagttgaatagtttgatcattaccaattctaccttgagtggtgcaggaaccctttgcatatcaagtgctacgcttatga |
7976320 |
T |
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| Q |
155 |
attttactatgtataatcgttt |
176 |
Q |
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| T |
7976319 |
acttaactatgtatactcgttt |
7976298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 2996095 - 2996044
Alignment:
| Q |
53 |
ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattg |
104 |
Q |
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| T |
2996095 |
ccgagccattttcgacttttaacaggttgaataatttgctcatttccaattg |
2996044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 45856484 - 45856400
Alignment:
| Q |
58 |
ccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaatcgtgcaggaacccttcgcatatcaagtg |
142 |
Q |
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| T |
45856484 |
ccattttcaacctttaaacggttgaatagtttggtcctttacaattgtgctttgaaggatgcagtaaccctttgcatatcaagtg |
45856400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 44501059 - 44500999
Alignment:
| Q |
53 |
ccgagccattttcaacttttaacaagttgaatagtttgctccttaccaattgtaccttgaa |
113 |
Q |
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| T |
44501059 |
ccgagccattttcaacctttaacagattgaatagtttggtccttcacgattgtaccgtgaa |
44500999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 3978575 - 3978615
Alignment:
| Q |
53 |
ccgagccattttcaacttttaacaagttgaatagtttgctc |
93 |
Q |
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| T |
3978575 |
ccgagccattttcgatttttaacaggttgaatagtttgctc |
3978615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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