View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_64 (Length: 234)
Name: NF3813_low_64
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 32784251 - 32784434
Alignment:
| Q |
35 |
cagagacacaaacccacatcttcaatggaaaactctcatctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattcc |
134 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32784251 |
cagagacacaaacccacatcttcaatgaaaaagtctcatctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattcc |
32784350 |
T |
|
| Q |
135 |
aacaataggaataacagagagactattactatcaccactatctagcaataactgattaatgattttttgtttatcatgttttct |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32784351 |
aacaataggaataacagagagactattactatcaccactatctagcaataactgattaatgattttttgtttatcatgttttct |
32784434 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 49340660 - 49340477
Alignment:
| Q |
35 |
cagagacacaaacccacatcttcaatggaaaactctcatctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattcc |
134 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
49340660 |
cagagacacacacccacatcttcaatggaaaagtctcatctaaactcttatcattaaacacgacctttgcaagtgtagtttttcctaatcctccaattcc |
49340561 |
T |
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| Q |
135 |
aacaataggaataacagagagactattactatcaccactatctagcaataactgattaatgattttttgtttatcatgttttct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
49340560 |
aacaataggaataacagagagactattactatcaccactatcttgcaataacagattaatgattttttgtttatcatgttttct |
49340477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 49352024 - 49351845
Alignment:
| Q |
35 |
cagagacacaaacccacatcttcaatggaaaactctcatctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattcc |
134 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
49352024 |
cagagacacacacccacatcttcaatggaaaagtctcatctaaactcttatcattaaacactgcctttgcaagtgtagtctttcctaatcctccaattcc |
49351925 |
T |
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| Q |
135 |
aacaataggaataacagagagactattactatcaccactatctagcaataactgattaatgattttttgtttatcatgtt |
214 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||| |
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| T |
49351924 |
aacaacaggaataacagagagactattactatcaccgctatcttgcaataacatatcaatgattttttgtttatcatgtt |
49351845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 19030429 - 19030339
Alignment:
| Q |
40 |
acacaaacccacatcttcaatggaaaactctcatctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaa |
130 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19030429 |
acacacacccacatcttcaatggaaaagtctcatctaaactcttaacattaaacactgcctttgcaagtgtagtttttcctaatcctccaa |
19030339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 29602874 - 29603043
Alignment:
| Q |
37 |
gagacacaaacccacatcttcaatggaaaactctcatctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattccaa |
136 |
Q |
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|
|||||||| ||||||||||| ||||| ||| |||| ||||||||||||||||| ||||| | ||||| ||||||||| ||||| || ||||||||||||| |
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| T |
29602874 |
gagacacacacccacatctttaatgggaaagtctcgtctaaactcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaa |
29602973 |
T |
|
| Q |
137 |
caataggaataacagagagactattactatcaccactatctagcaataactgattaatgattttttgtttatc |
209 |
Q |
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|||||||||||||||||||||| | ||| |||||||||| ||||||| ||| ||| |||||||| ||||| |
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| T |
29602974 |
caataggaataacagagagacttt---tatgaccactatcttgcaataagagatcaataattttttgcttatc |
29603043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 37 - 209
Target Start/End: Complemental strand, 29750420 - 29750251
Alignment:
| Q |
37 |
gagacacaaacccacatcttcaatggaaaactctcatctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattccaa |
136 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||| ||||||||||||||||| ||||| | ||||| ||||||||| ||||| || ||||||||||||| |
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| T |
29750420 |
gagacacacacccacatctttaatggaaatgtctcgtctaaactcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaa |
29750321 |
T |
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| Q |
137 |
caataggaataacagagagactattactatcaccactatctagcaataactgattaatgattttttgtttatc |
209 |
Q |
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|||||||||||||||||||||| | ||| |||||||||| ||||||| ||| ||| |||||||| ||||| |
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| T |
29750320 |
caataggaataacagagagacttt---tatgaccactatcttgcaataagagatcaataattttttgcttatc |
29750251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 29743383 - 29743264
Alignment:
| Q |
37 |
gagacacaaacccacatcttcaatggaaaactctcatctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattccaa |
136 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||| ||||||||||||||||| ||||||| ||||| ||| ||||| ||||| || ||||||||||||| |
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| T |
29743383 |
gagacacacacccacatctttaatggaaaagtctcgtctaaactcttatcattgaacactgtctttgcaagcgtagtctttcccaagcctccaattccaa |
29743284 |
T |
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| Q |
137 |
caataggaataacagagaga |
156 |
Q |
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|||||||||||||||||||| |
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| T |
29743283 |
caataggaataacagagaga |
29743264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 35939502 - 35939573
Alignment:
| Q |
79 |
ctcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattccaacaataggaataaca |
150 |
Q |
| |
|
||||||||||| ||||| ||||| |||||| || || ||||||||||||||||| ||||| ||||||||| |
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| T |
35939502 |
ctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataaca |
35939573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 35958160 - 35958243
Alignment:
| Q |
79 |
ctcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattccaacaataggaataacagagagactatta |
162 |
Q |
| |
|
||||||||||| ||||| | ||||| |||||| || ||||| || ||||||||||| || || ||||| ||| ||||||||||| |
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|
| T |
35958160 |
ctcttatcattgaacaccgactttgcaagtgttgtctttcccaaacctccaattcccactattggaatgacacagagactatta |
35958243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 35157545 - 35157441
Alignment:
| Q |
48 |
ccacatcttcaatggaaaactctcatctaaactcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattccaacaataggaata |
147 |
Q |
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||||||||| ||||||||| ||| ||| |||||||||||||||||| | |||| ||||||||| ||||| | ||||||| ||| ||||||| || | |
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| T |
35157545 |
ccacatctttaatggaaaagagtcaactacactcttatcattaaacacaacttttgcaagtgtagtctttcccatacctccaagtcccacaatagcaaca |
35157446 |
T |
|
| Q |
148 |
acaga |
152 |
Q |
| |
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||||| |
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|
| T |
35157445 |
acaga |
35157441 |
T |
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