View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_65 (Length: 234)
Name: NF3813_low_65
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7687830 - 7687610
Alignment:
| Q |
1 |
gattctattgttggatgacatataggtgaatattttcctaaagccaatgacgatgcattatctatttgggaggatgaatccattgccttcgatgccttgg |
100 |
Q |
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| T |
7687830 |
gattcttttgttggatgacatataggtgaatattttcctaaagccaatgacgatgcattatctatttgggaggatgaatccattgccttcgatgccttgg |
7687731 |
T |
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| Q |
101 |
caaatgattcttttgctggtgataatgcaagtatagttgaattctcaaaagtaagatatgttatcaattcatttggaacattctcctagccttcttgttc |
200 |
Q |
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| T |
7687730 |
caaatgattcttttgctggtgataatgcaagtatagttgaattctcaaaagtaagatatgttatcaattcatttggaacattctcctagccttcttgttc |
7687631 |
T |
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| Q |
201 |
ctgttattctatgttgattct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7687630 |
ctgttattctatgttgattct |
7687610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 13887136 - 13886964
Alignment:
| Q |
1 |
gattctattgttggatgacatataggtgaatattttcctaaagccaatgacgatgcattatctatttgggaggatgaatccattgccttcgatgccttgg |
100 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||| || ||| ||||||| |||||||| |||||||| |||||||| ||| |||| | |
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| T |
13887136 |
gattctattgttggatgaaatacaggtgaatattttcctaaagccaccgatgatacattatcgatttgggaagatgaatctattgcctttgatcccttag |
13887037 |
T |
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| Q |
101 |
caaatgattcttttgctggtgataatgcaagtatagttgaattctcaaaagtaagatatgttatcaattcatt |
173 |
Q |
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| T |
13887036 |
caaatgattattttgctggtgataatgcaagtatagttgaattctcaaaagtaagatatgttgtcaattcatt |
13886964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 14027261 - 14027089
Alignment:
| Q |
1 |
gattctattgttggatgacatataggtgaatattttcctaaagccaatgacgatgcattatctatttgggaggatgaatccattgccttcgatgccttgg |
100 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||| || ||| ||||||| |||||||| |||||||| |||||||| ||| |||| | |
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| T |
14027261 |
gattctattgttggatgaaatacaggtgaatattttcctaaagccaccgatgatacattatcgatttgggaagatgaatctattgcctttgatcccttag |
14027162 |
T |
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| Q |
101 |
caaatgattcttttgctggtgataatgcaagtatagttgaattctcaaaagtaagatatgttatcaattcatt |
173 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14027161 |
caaatgattattttgctggtgataatgcaagtatagttgaattctcaaaagtaagatatgttgtcaattcatt |
14027089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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