View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3813_low_66 (Length: 233)

Name: NF3813_low_66
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3813_low_66
NF3813_low_66
[»] chr1 (30 HSPs)
chr1 (1-220)||(5300419-5300650)
chr1 (1-113)||(38865379-38865492)
chr1 (1-115)||(45467660-45467774)
chr1 (1-115)||(19512856-19512971)
chr1 (57-115)||(44573874-44573932)
chr1 (42-115)||(31636516-31636589)
chr1 (56-115)||(44240435-44240494)
chr1 (1-43)||(6704237-6704279)
chr1 (111-180)||(30335636-30335705)
chr1 (28-114)||(23625138-23625225)
chr1 (61-115)||(4448034-4448088)
chr1 (42-115)||(50270782-50270855)
chr1 (57-124)||(14395969-14396037)
chr1 (56-115)||(51244085-51244144)
chr1 (57-115)||(3582770-3582828)
chr1 (74-116)||(6704182-6704224)
chr1 (57-115)||(14884668-14884726)
chr1 (58-115)||(42489059-42489116)
chr1 (1-72)||(35266010-35266081)
chr1 (72-115)||(15457041-15457084)
chr1 (56-115)||(33603444-33603503)
chr1 (111-182)||(35615395-35615466)
chr1 (69-115)||(5827612-5827658)
chr1 (57-115)||(32913925-32913983)
chr1 (74-115)||(1774982-1775023)
chr1 (183-220)||(5300663-5300700)
chr1 (75-115)||(33259434-33259474)
chr1 (75-115)||(33279593-33279633)
chr1 (138-186)||(43177758-43177806)
chr1 (28-119)||(44415928-44416020)
[»] chr3 (13 HSPs)
chr3 (1-175)||(47968062-47968238)
chr3 (58-127)||(45707704-45707774)
chr3 (28-115)||(4489494-4489582)
chr3 (28-115)||(52669744-52669832)
chr3 (69-162)||(25926342-25926435)
chr3 (28-115)||(22909408-22909496)
chr3 (57-115)||(48457980-48458038)
chr3 (50-115)||(38138226-38138291)
chr3 (69-115)||(21079992-21080038)
chr3 (57-115)||(29178576-29178634)
chr3 (116-178)||(38138150-38138212)
chr3 (69-115)||(50596181-50596227)
chr3 (84-124)||(47180682-47180723)
[»] chr8 (13 HSPs)
chr8 (1-115)||(7176694-7176809)
chr8 (1-178)||(14728841-14729031)
chr8 (28-115)||(38901229-38901316)
chr8 (57-115)||(10288098-10288156)
chr8 (50-115)||(32953216-32953281)
chr8 (63-115)||(26705772-26705824)
chr8 (69-115)||(7573094-7573140)
chr8 (70-115)||(17793345-17793390)
chr8 (50-115)||(29416669-29416734)
chr8 (111-180)||(44104277-44104346)
chr8 (118-181)||(10288172-10288235)
chr8 (69-115)||(41123350-41123396)
chr8 (76-124)||(14581192-14581241)
[»] chr7 (15 HSPs)
chr7 (1-115)||(46209014-46209129)
chr7 (16-175)||(10248962-10249135)
chr7 (57-115)||(30224754-30224812)
chr7 (28-115)||(41003367-41003455)
chr7 (57-115)||(25795821-25795879)
chr7 (57-115)||(33882117-33882175)
chr7 (28-115)||(33987789-33987877)
chr7 (57-115)||(958007-958065)
chr7 (57-115)||(5532759-5532817)
chr7 (69-115)||(37503960-37504006)
chr7 (72-115)||(22074340-22074383)
chr7 (111-162)||(36655817-36655868)
chr7 (57-115)||(23307838-23307896)
chr7 (49-115)||(27816505-27816571)
chr7 (105-161)||(9153809-9153866)
[»] chr4 (18 HSPs)
chr4 (1-115)||(37247205-37247320)
chr4 (1-115)||(2062359-2062473)
chr4 (57-181)||(51676895-51677020)
chr4 (28-115)||(45064212-45064299)
chr4 (1-64)||(53455129-53455193)
chr4 (50-115)||(8757452-8757517)
chr4 (76-178)||(22424940-22425054)
chr4 (50-115)||(36219136-36219201)
chr4 (28-115)||(39193275-39193363)
chr4 (69-115)||(51997280-51997326)
chr4 (50-115)||(29627924-29627989)
chr4 (28-115)||(40047010-40047098)
chr4 (111-162)||(34483466-34483517)
chr4 (57-111)||(258265-258319)
chr4 (56-114)||(45047120-45047178)
chr4 (74-115)||(26417274-26417315)
chr4 (82-115)||(32212185-32212218)
chr4 (118-178)||(32212100-32212160)
[»] scaffold0578 (1 HSPs)
scaffold0578 (1-115)||(9967-10082)
[»] chr2 (12 HSPs)
chr2 (1-115)||(449069-449182)
chr2 (54-186)||(20683410-20683550)
chr2 (57-115)||(11916000-11916058)
chr2 (111-180)||(43302424-43302493)
chr2 (57-115)||(11511918-11511976)
chr2 (50-115)||(27974421-27974486)
chr2 (50-115)||(28060950-28061015)
chr2 (54-115)||(43302352-43302413)
chr2 (57-115)||(7772792-7772850)
chr2 (57-163)||(4062512-4062630)
chr2 (51-115)||(448808-448872)
chr2 (111-156)||(45154442-45154487)
[»] chr5 (19 HSPs)
chr5 (42-179)||(8433670-8433819)
chr5 (28-116)||(33207494-33207583)
chr5 (28-115)||(39324071-39324159)
chr5 (57-181)||(10933546-10933681)
chr5 (28-115)||(37194286-37194374)
chr5 (28-151)||(32534860-32534988)
chr5 (50-115)||(25768216-25768281)
chr5 (57-115)||(33494726-33494783)
chr5 (138-193)||(606333-606388)
chr5 (69-115)||(13417257-13417303)
chr5 (57-115)||(30471804-30471862)
chr5 (57-115)||(38037431-38037489)
chr5 (42-115)||(4277396-4277469)
chr5 (50-115)||(5367762-5367827)
chr5 (50-115)||(5495612-5495677)
chr5 (137-178)||(13905884-13905925)
chr5 (57-98)||(14639951-14639992)
chr5 (51-115)||(2552501-2552565)
chr5 (84-116)||(13905958-13905990)
[»] scaffold0110 (1 HSPs)
scaffold0110 (28-181)||(26669-26824)
[»] scaffold1114 (1 HSPs)
scaffold1114 (28-114)||(2336-2423)
[»] chr6 (7 HSPs)
chr6 (28-115)||(29383433-29383521)
chr6 (30-115)||(6793901-6793987)
chr6 (57-115)||(378632-378690)
chr6 (57-115)||(11703169-11703227)
chr6 (50-116)||(4405690-4405756)
chr6 (57-115)||(30250384-30250442)
chr6 (125-178)||(33099520-33099573)
[»] scaffold0092 (1 HSPs)
scaffold0092 (56-113)||(4817-4874)
[»] scaffold0067 (1 HSPs)
scaffold0067 (137-178)||(400-441)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5300419 - 5300650
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||    
T  5300419 tattaaaataataattttcatggctattaaataatatttgtgggaccctattagaccttttgttagaggatcttcattggagtagttgagtacctattaa 5300518  T
Q  100 gtactattattaaaaa------------tgatgtgtccatatgaaacctatttaagacctcaaaattgagggtctttattatggatgctcttagggcact 187  Q
    ||||||||||||||||            |||||||||||||||| ||  |||||| | |||||| |||||||||||  || || |||||||||  |||||    
T  5300519 gtactattattaaaaaaatattaaaaagtgatgtgtccatatgagactcatttaaaaactcaaagttgagggtcttctttgtgaatgctcttatagcact 5300618  T
Q  188 tgttagtataacattttttatctatgaataaat 220  Q
    ||||| |||||  |||||||||||| |||||||    
T  5300619 tgttaatataa-tttttttatctataaataaat 5300650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 38865492 - 38865379
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||| |||||||| ||| ||||||||||||    
T  38865492 tattaaaataataattttcatggctattaaataatatttgtgggaccctattagaccttttgttagaggatctcaattggagtggttaagtacctattaa 38865393  T
Q  100 gtactattattaaa 113  Q
    ||||||||||||||    
T  38865392 gtactattattaaa 38865379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 45467774 - 45467660
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||| ||| ||||| ||||||||||    
T  45467774 tattaaaataataattt-catggctattaaataatatttgtgggaccctattagacattttgttagaggatctctattgaagtggttgaatacctattaa 45467676  T
Q  100 gtactattattaaaaa 115  Q
     |||||||||||||||    
T  45467675 atactattattaaaaa 45467660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 19512856 - 19512971
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgt-ggaccctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| |||||| |  |||||||| || |||| ||||||||| ||||||||||||||||    
T  19512856 tattaaaataataattttcatggccattaaataatatttgtgggactctattaaaatttttgttaaaggatcttcattggagtggttgagtacctattaa 19512955  T
Q  100 gtactattattaaaaa 115  Q
    ||| ||||||||||||    
T  19512956 gtattattattaaaaa 19512971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 44573932 - 44573874
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||    
T  44573932 ttttgttagaggatctccattggagtggttgagtacctattaggtactattattaaaaa 44573874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 31636516 - 31636589
Alignment:
Q  42 ggaccctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||| ||||||  |||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  31636516 ggacccaattagactttttgttagagggtctccattggagtggttgagtacctattaggtactattattaaaaa 31636589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 44240494 - 44240435
Alignment:
Q  56 attttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  44240494 attttgatagaggatctccattgaagtagttgagtacctattaaatactattattaaaaa 44240435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6704279 - 6704237
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6704279 tattaaaataataattttcatggctattaaataatatttgtgg 6704237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 30335705 - 30335636
Alignment:
Q  111 aaaaatgatgtgtccatatgaaacctatttaagacctcaaaattgagggtctttattatggatgctctta 180  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||||||||  ||| ||||||||||||    
T  30335705 aaaaatgatgtgtcaatgtgaaacctgtttaagacctcaaagttgagggtctccattgtggatgctctta 30335636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 23625138 - 23625225
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaa 114  Q
    ||||||||||| |||| | || ||||||  |||||||||||  |||| |||||||| ||||||||||| |||||||||||||||||||    
T  23625138 taaataatattggtgggatccaattagaccttttgttagagggtctctattggagtggttgagtacctgttaagtactattattaaaa 23625225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 4448034 - 4448088
Alignment:
Q  61 gttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  4448034 gttagagggtctccattggagtggttgagtacctattaggtactattattaaaaa 4448088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 50270782 - 50270855
Alignment:
Q  42 ggaccctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||| ||||||  |||||||||||  |||| |||||||||||||||| ||||||| |||||||| |||||||    
T  50270782 ggacccaattagaccttttgttagagggtctctattggagtagttgagtgcctattaggtactattgttaaaaa 50270855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 14396037 - 14395969
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattatta-aaaatgatgtgtc 124  Q
    |||||||||||  |||| |||||||| ||| ||||||||||| |||||||||||| |||||||||||||    
T  14396037 ttttgttagagggtctctattggagtggttaagtacctattaggtactattattaaaaaatgatgtgtc 14395969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 51244144 - 51244085
Alignment:
Q  56 attttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||| ||||  ||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  51244144 attttgatagatgatctcgattggaatagttgagtacctattaggtactattattaaaaa 51244085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 3582770 - 3582828
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| ||||| |||| ||||||||| |||||||||||||||  |||||||||||||||    
T  3582770 ttttgatagaggatctacattggagtggttgagtacctattagatactattattaaaaa 3582828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 6704224 - 6704182
Alignment:
Q  74 cattggagtagttgagtacctattaagtactattattaaaaat 116  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  6704224 cattggagtggttgagtacctattaaatactattattaaaaat 6704182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 14884668 - 14884726
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||| ||  ||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  14884668 ttttgttaaagggtcttcattggagtggttgagtacctattaggtactattattaaaaa 14884726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 42489059 - 42489116
Alignment:
Q  58 tttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||| ||||| ||||| |||||||| || |||||||||||| ||||||||||||||||    
T  42489059 tttgatagaggatctctattggagtggtcgagtacctattaggtactattattaaaaa 42489116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35266081 - 35266010
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtg-gaccctattagatattttgttagagaatct 72  Q
    |||||||||||||||||| ||  ||||||||||||||||||| |||||  ||| || ||||||||||||||||    
T  35266081 tattaaaataataatttttataactattaaataatatttgtgagaccccgttaaat-ttttgttagagaatct 35266010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 15457084 - 15457041
Alignment:
Q  72 tccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||    
T  15457084 tccattggagtggttgagtacatattaggtactattattaaaaa 15457041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 33603503 - 33603444
Alignment:
Q  56 attttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||  ||||  | |||||| ||||| ||||||||||||||||||||||||||    
T  33603503 attttgttagaagatctttaatggagttgttgaatacctattaagtactattattaaaaa 33603444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 35615466 - 35615395
Alignment:
Q  111 aaaaatgatgtgtccatatgaaacctatttaagacctcaaaattgagggtctttattatggatgctcttagg 182  Q
    ||||||||||||||  | || || | ||||||||||||||| ||||||||||  ||| ||||||||||||||    
T  35615466 aaaaatgatgtgtcattgtggaatccatttaagacctcaaagttgagggtctccattgtggatgctcttagg 35615395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 5827612 - 5827658
Alignment:
Q  69 atctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||||| ||| |||||||||||||||| |||| ||||||    
T  5827612 atctccattggagtggttcagtacctattaagtaccattactaaaaa 5827658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 32913925 - 32913983
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||  |||| ||||||||  ||||||||||||||  |||||||||||||||    
T  32913925 ttttgttagaggttctctattggagtgattgagtacctattagatactattattaaaaa 32913983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 1774982 - 1775023
Alignment:
Q  74 cattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||| |||||||||||||||  |||||||||||||||    
T  1774982 cattggagtggttgagtacctattagatactattattaaaaa 1775023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 5300663 - 5300700
Alignment:
Q  183 gcacttgttagtataacattttttatctatgaataaat 220  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  5300663 gcacttgttagtataactttttttatctataaataaat 5300700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 33259474 - 33259434
Alignment:
Q  75 attggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||  |||||||||||||| ||||||||||||||||    
T  33259474 attggagtgattgagtacctattatgtactattattaaaaa 33259434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 33279633 - 33279593
Alignment:
Q  75 attggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||  |||||||||||||| ||||||||||||||||    
T  33279633 attggagtgattgagtacctattatgtactattattaaaaa 33279593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 43177806 - 43177758
Alignment:
Q  138 tttaagacctcaaaattgagggtctttattatggatgctcttagggcac 186  Q
    ||||||||||||||  |||||||||  ||| ||||||||||||||||||    
T  43177806 tttaagacctcaaatgtgagggtctccattgtggatgctcttagggcac 43177758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 44415928 - 44416020
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaatgat 119  Q
    ||||||||||| |||| |||| |||||| ||||||||||||  ||| | ||||||| ||| |||| | ||||   ||||||||||||||||||    
T  44415928 taaataatattggtgggacccaattagacattttgttagagggtcttcgttggagtggtttagtatccattagacactattattaaaaatgat 44416020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 47968062 - 47968238
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||    
T  47968062 tattaaaataataattttcatggctattaaataatatttgtgggaccctattagacattttgttagaggatctccattagagtggttgagtacctattaa 47968161  T
Q  100 gtactattatt-aaaaatgatgtgtccatatgaaacctatttaagacctcaaaattgagggtctttattatggatgc 175  Q
    ||| ||||||| |||||||||| || | | ||  ||| ||||||||||||||| ||||||||||  ||| |||||||    
T  47968162 gtattattattaaaaaatgatgcgttcgtgtgtgacccatttaagacctcaaagttgagggtctccattgtggatgc 47968238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 45707704 - 45707774
Alignment:
Q  58 tttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa-tgatgtgtccat 127  Q
    |||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| |||||| |||||    
T  45707704 tttgttagaggatctctattggagtggttgagtacctattaggtactattattaaaaagtgatgtatccat 45707774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 4489494 - 4489582
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| |||| |||| |||||| ||||||||||||  ||||||||| ||| ||||||| |||||||  |||||||||||||||    
T  4489494 taaataatattggtgggacccaattagacattttgttagagggtctccattgtagtggttgagtgcctattagatactattattaaaaa 4489582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 52669744 - 52669832
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| |||| |||| |||| |  |||||||||||  ||||||||||||| |||||||||||||||  |||||||||||||||    
T  52669744 taaataatattggtgggacccaattaaaccttttgttagagggtctccattggagtggttgagtacctattagatactattattaaaaa 52669832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 25926435 - 25926342
Alignment:
Q  69 atctccattggagtagttgagtacctattaagtactattattaaaaatgatgtgtccatatgaaacctatttaagacctcaaaattgagggtct 162  Q
    |||||||||| ||| |||||||| |||||  ||||||||||||||| ||||| |||||| ||  |||  ||||||||||||||  |||||||||    
T  25926435 atctccattgaagtggttgagtatctattgggtactattattaaaagtgatgagtccatgtgggacccgtttaagacctcaaatgtgagggtct 25926342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 22909408 - 22909496
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| |||| |||| |||||   ||||| |||||  ||||||||| ||| |||||||||||||||| |||||||||||||||    
T  22909408 taaataatattggtgggacccaattaggccttttgctagagggtctccattgaagtggttgagtacctattaaatactattattaaaaa 22909496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 48457980 - 48458038
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||  |||| |||| ||||||||||||||||||| ||||||| ||||||||    
T  48457980 ttttgttagagggtctctattgaagtagttgagtacctattaggtactatcattaaaaa 48458038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 38138291 - 38138226
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| |||||| ||||| |||| ||||| | | ||||||||||||||| ||||||||||||||||    
T  38138291 ttagacattttgatagaggatcttcattgaattggttgagtacctattaggtactattattaaaaa 38138226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 21079992 - 21080038
Alignment:
Q  69 atctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| |||| ||| |||||||||||||||| |||||||||||||||    
T  21079992 atctctattgaagtggttgagtacctattaaatactattattaaaaa 21080038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 29178634 - 29178576
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| |||||  |||||||||||||  |||| ||||||||||||| ||||||||||||    
T  29178634 ttttgctagagggtctccattggagtgtttgaatacctattaagtattattattaaaaa 29178576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 38138212 - 38138150
Alignment:
Q  116 tgatgtgtccatatgaaacctatttaagacctcaaaattgagggtctttattatggatgctct 178  Q
    |||||||||||||||| |||  ||||||||||||||  |||||||||  ||| ||||||||||    
T  38138212 tgatgtgtccatatgagacccgtttaagacctcaaatgtgagggtctccattgtggatgctct 38138150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 50596181 - 50596227
Alignment:
Q  69 atctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| ||| |||| ||||||||||||||| ||||||||||||||||    
T  50596181 atctctatttgagtggttgagtacctattaggtactattattaaaaa 50596227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 47180682 - 47180723
Alignment:
Q  84 gttgagtacctattaagtactattattaaaaa-tgatgtgtc 124  Q
    ||||||||||||||| |||||||||||||||| |||||||||    
T  47180682 gttgagtacctattaggtactattattaaaaagtgatgtgtc 47180723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7176809 - 7176694
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||  |||||||||||||| ||||||||||||||||    
T  7176809 tattaaaataataattttcatggctattaaataatatttgtgggaccctattagaccttttgttagaagatctccattggagtggttgagtacctattaa 7176710  T
Q  100 gtactattattaaaaa 115  Q
    ||||||||||||||||    
T  7176709 gtactattattaaaaa 7176694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 14729031 - 14728841
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||| |||||||| ||||||||||||||||    
T  14729031 tattaaaataatatttttcatggctattaaataatatttgtgggaccctattagaccttttgttagaggatctctattggagtggttgagtacctattaa 14728932  T
Q  100 gtactattattaaaaa------------tgatgtgtccatatgaaacctatttaagacctcaaaattgagggtctttattatggatgctct 178  Q
    ||| ||||||||||||            |||||||||||| ||| ||| ||||||||||||||| ||||||||||  ||| ||||||||||    
T  14728931 gtattattattaaaaaattattaaaaagtgatgtgtccatgtgagacccatttaagacctcaaagttgagggtctccattgtggatgctct 14728841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 38901316 - 38901229
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| |||| |||| ||||||  |||| ||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  38901316 taaataatattggtgggacccaattagacttttt-ttagagggtctccattggagtggttgagtacctattaggtactattattaaaaa 38901229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 10288098 - 10288156
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| ||||| |||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  10288098 ttttgatagaggatcttcattggagtggttgagtacctattaggtactattattaaaaa 10288156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 32953216 - 32953281
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| |||||| ||||| |||||||||||||| |||| |||||||||| |||||||||| |||||    
T  32953216 ttagacattttgatagaggatctccattggagtggttgggtacctattaggtactattataaaaaa 32953281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 26705824 - 26705772
Alignment:
Q  63 tagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| ||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  26705824 tagaggatctctattggagtggttgagtacctattaggtactattattaaaaa 26705772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 7573140 - 7573094
Alignment:
Q  69 atctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||    
T  7573140 atctccattgtagtggttgagtacctattaaatactattattaaaaa 7573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 17793345 - 17793390
Alignment:
Q  70 tctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||||    
T  17793345 tctccatttgagtggttgagtacctattaggtactattattaaaaa 17793390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 29416669 - 29416734
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| |||||| ||||  ||||||||| |||| ||||| ||||||||| ||||||||||||||||    
T  29416669 ttagacattttgatagaagatctccattagagtggttgattacctattaggtactattattaaaaa 29416734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 44104277 - 44104346
Alignment:
Q  111 aaaaatgatgtgtccatatgaaacctatttaagacctcaaaattgagggtctttattatggatgctctta 180  Q
    ||||||||||| ||||| ||  |||  |||||||||| |||||||||||||| ||||||||||| |||||    
T  44104277 aaaaatgatgtatccatgtgggacccgtttaagaccttaaaattgagggtctctattatggatgttctta 44104346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 10288172 - 10288235
Alignment:
Q  118 atgtgtccatatgaaacctatttaagacctcaaaattgagggtctttattatggatgctcttag 181  Q
    |||||||||| ||| |||  ||||||||||||||  |||||||||||||| | |||||||||||    
T  10288172 atgtgtccatgtgagacccgtttaagacctcaaatgtgagggtctttattgtagatgctcttag 10288235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 41123350 - 41123396
Alignment:
Q  69 atctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||||| |||||||||||||||  || ||||||||||||    
T  41123350 atctccattggagtggttgagtacctattagatagtattattaaaaa 41123396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 14581241 - 14581192
Alignment:
Q  76 ttggagtagttgagtacctattaagtactattattaaaaa-tgatgtgtc 124  Q
    ||||| |||||||||||||||||  ||||||||||||||| |||||||||    
T  14581241 ttggactagttgagtacctattagatactattattaaaaagtgatgtgtc 14581192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 46209129 - 46209014
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||||| |||||||||||||| |||| |||||||||||    
T  46209129 tattaaaataataattttcatagctattaaataatatttgtgggaccctattagaccttttgttagaggatctccattggagtggttgggtacctattaa 46209030  T
Q  100 gtactattattaaaaa 115  Q
     || ||||||||||||    
T  46209029 atattattattaaaaa 46209014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 10249135 - 10248962
Alignment:
Q  16 tttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagta-cctattaagtactattattaaa 113  Q
    |||||||||  ||||||||||||| ||| |||||||||||  ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||    
T  10249135 tttcatggccgttaaataatatttttgggaccctattagaccttttgttagaggatctccattggagtggttgagtaccctattaagtattattattaaa 10249036  T
Q  114 aa------------tgatgtgtccatatgaaacctatttaagacctcaaaattgagggtctttattatggatgc 175  Q
    ||            |||||||||||||||  ||| ||||||||||||||| ||||||||||  ||| |||||||    
T  10249035 aaattattaaaaagtgatgtgtccatatgggacccatttaagacctcaaagttgagggtctccattgtggatgc 10248962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 30224754 - 30224812
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||    
T  30224754 ttttgttagagagtctccattagagtggttgagtacctattaggtactattattaaaaa 30224812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 41003455 - 41003367
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| |||| || | ||||||| |||||||||||  ||||||||||||| |||| ||||||||||| ||||||| |||||||    
T  41003455 taaataatattggtgggactcaattagatcttttgttagagggtctccattggagtggttgggtacctattaattactattgttaaaaa 41003367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 25795879 - 25795821
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| ||||||| ||||||||    
T  25795879 ttttgttagaggatctctattggagtggttgagtacctattaggtactatcattaaaaa 25795821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 33882117 - 33882175
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| ||||| |||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  33882117 ttttgatagaggatctccattgaagtggttgagtacctattaggtactattattaaaaa 33882175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 33987789 - 33987877
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| |||| | || |||||| ||||||||||||  | | ||||| ||| |||||||||||||||| |||||||||||||||    
T  33987789 taaataatattagtgggatccaattagacattttgttagagggtattcattgaagtggttgagtacctattaaatactattattaaaaa 33987877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 958065 - 958007
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| ||||| |||| ||||||||| ||| ||||||||||| ||||||||||||||||    
T  958065 ttttgatagaggatcttcattggagtggttaagtacctattaggtactattattaaaaa 958007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 5532817 - 5532759
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||| ||| |||||||||| ||| |||||||||||||||  |||||||||||||||    
T  5532817 ttttgttggaggatctccattgtagtggttgagtacctattagatactattattaaaaa 5532759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 37503960 - 37504006
Alignment:
Q  69 atctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||    
T  37503960 atctccattggagtggttgagtacctattagatactattattaaaaa 37504006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 22074340 - 22074383
Alignment:
Q  72 tccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||    
T  22074340 tccattggagtggttgagtatctattatgtactattattaaaaa 22074383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 36655817 - 36655868
Alignment:
Q  111 aaaaatgatgtgtccatatgaaacctatttaagacctcaaaattgagggtct 162  Q
    |||||||||||||| ||||| |||| |||||| |||||||| ||||||||||    
T  36655817 aaaaatgatgtgtcaatatggaacccatttaaaacctcaaagttgagggtct 36655868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 23307838 - 23307896
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| ||||| ||||| ||||||||  |||||||||||||| |||||| |||||||||    
T  23307838 ttttgatagaggatctctattggagtgcttgagtacctattatgtactaatattaaaaa 23307896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 27816505 - 27816571
Alignment:
Q  49 attagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||| ||||||||||||  |||||||||||||  || |||||||||||  |||||||||| ||||    
T  27816505 attagacattttgttagagggtctccattggagtgatttagtacctattagatactattatttaaaa 27816571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 9153809 - 9153866
Alignment:
Q  105 attattaaaaa-tgatgtgtccatatgaaacctatttaagacctcaaaattgagggtc 161  Q
    ||||||||||| |||||||||||| ||  ||  |||||||||||||||||||||||||    
T  9153809 attattaaaaagtgatgtgtccatgtgggacacatttaagacctcaaaattgagggtc 9153866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 37247320 - 37247205
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||| |||||||  |||||||| || |||||||||||||| ||||||||||||||||    
T  37247320 tattaaaataataattttcatggcaattaaataatatttgtgggaccntattagaccttttgttaaaggatctccattggagtggttgagtacctattaa 37247221  T
Q  100 gtactattattaaaaa 115  Q
     | |||||||||||||    
T  37247220 atgctattattaaaaa 37247205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 2062359 - 2062473
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |  ||||||||||  || | |||| |||| ||||||||||||||||    
T  2062359 tattaaaataataattt-catggatattaaataatatttgtggcaccctattaaaccttttgttagaagattttcattagagtggttgagtacctattaa 2062457  T
Q  100 gtactattattaaaaa 115  Q
    ||||||||||||||||    
T  2062458 gtactattattaaaaa 2062473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 51676895 - 51677020
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattatt-aaaaatgatgtgtccatatgaaacctatttaagacctcaaaattg 155  Q
    ||||||| ||| |||||||||| ||| ||||||||||||||| || |||||||| |||||||||||||| || ||    | ||||||||||||||| |||    
T  51676895 ttttgttggaggatctccattgtagtggttgagtacctattaggttctattattaaaaaatgatgtgtcaatgtggggtccatttaagacctcaaagttg 51676994  T
Q  156 agggtctttattatggatgctcttag 181  Q
    |||||||  ||| |||||| ||||||    
T  51676995 agggtctccattgtggatgttcttag 51677020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 45064212 - 45064299
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| |||| |||| ||||||  ||||||||||| |||||||||| ||| | ||||||||||||| ||||||||||||||||    
T  45064212 taaataatattggtgggacccaattagaccttttgttagaggatctccattg-agtggctgagtacctattaggtactattattaaaaa 45064299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 53455193 - 53455129
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgt-ggaccctattagatattttgtta 64  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| |||||||||  ||||||||    
T  53455193 tattaaaataataatttttatggctattaaataatatttgtgggatcctattagactttttgtta 53455129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 8757452 - 8757517
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| |||||| ||||| ||||| |||||| | |||||||||||||||| |||||||||||||||    
T  8757452 ttagacattttggtagaggatctctattggaatggttgagtacctattaaatactattattaaaaa 8757517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 178
Target Start/End: Complemental strand, 22425054 - 22424940
Alignment:
Q  76 ttggagtagttgagtacctattaagtactattattaaaaa------------tgatgtgtccatatgaaacctatttaagacctcaaaattgagggtctt 163  Q
    ||||||| ||||||||||||||| ||||||||||||||||            |||||||||||| || |||||||||||||||||||| |||| |||||     
T  22425054 ttggagtggttgagtacctattaggtactattattaaaaaattatcaaaaagtgatgtgtccatgtggaacctatttaagacctcaaagttgaaggtctc 22424955  T
Q  164 tattatggatgctct 178  Q
     ||| ||||||||||    
T  22424954 cattgtggatgctct 22424940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 36219136 - 36219201
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| |||||| ||||  ||||||||||||||  |||||||||||||| ||||||||||||||||    
T  36219136 ttagacattttgatagatgatctccattggagtgattgagtacctattaggtactattattaaaaa 36219201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 39193275 - 39193363
Alignment:
Q  28 taaataatatttgtg-gaccctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| ||| || || ||||||| |||||||||||  ||||||||||||| |||||||| |||||| |||| ||| |||||||    
T  39193275 taaataatattggtgagatccaattagatcttttgttagagggtctccattggagtggttgagtaactattaggtaccattgttaaaaa 39193363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 51997280 - 51997326
Alignment:
Q  69 atctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  51997280 atctccattgtagtggttgagtacctattaggtactattattaaaaa 51997326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 29627989 - 29627924
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| |||||| ||||| |||| ||||||||| |||||||||||||||  |||||| ||||||||    
T  29627989 ttagacattttgatagaggatcttcattggagtggttgagtacctattagatactatgattaaaaa 29627924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 40047010 - 40047098
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| |||| |||| |||| |  |||||||||||  |||| |||| ||| |||||||| |||||| ||||||||||||||||    
T  40047010 taaataatattggtgggacccaattaaactttttgttagagggtctctattgaagtggttgagtatctattaggtactattattaaaaa 40047098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 34483517 - 34483466
Alignment:
Q  111 aaaaatgatgtgtccatatgaaacctatttaagacctcaaaattgagggtct 162  Q
    |||| |||||||||||| ||||||| |||||||||||||||  |||||||||    
T  34483517 aaaagtgatgtgtccatgtgaaacccatttaagacctcaaatgtgagggtct 34483466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 258319 - 258265
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattatta 111  Q
    ||||| ||||| |||||||||| ||| ||||||||||||||| || |||||||||    
T  258319 ttttgatagaggatctccattgaagtggttgagtacctattatgtgctattatta 258265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 45047178 - 45047120
Alignment:
Q  56 attttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaa 114  Q
    ||||||||||||  |||| ||| |||| ||||||||||||||| ||||||| |||||||    
T  45047178 attttgttagagggtctctatttgagtggttgagtacctattaggtactatcattaaaa 45047120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 26417274 - 26417315
Alignment:
Q  74 cattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||| ||||||||||||||| |||| |||||||||||    
T  26417274 cattggagtggttgagtacctattaggtaccattattaaaaa 26417315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 32212218 - 32212185
Alignment:
Q  82 tagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||||||||| ||||||||||||||||    
T  32212218 tagttgagtacctattaggtactattattaaaaa 32212185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 32212160 - 32212100
Alignment:
Q  118 atgtgtccatatgaaacctatttaagacctcaaaattgagggtctttattatggatgctct 178  Q
    |||||||||||||| | |  ||||||||||||| ||||| ||||| |||| ||||||||||    
T  32212160 atgtgtccatatgagatccgtttaagacctcaagattgaaggtctctattgtggatgctct 32212100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 10082 - 9967
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |||||| |  |||||||| || |||| ||||||||| ||||||||||||||||    
T  10082 tattaaaataataattttcatggccattaaataatatttgtgggactctattaaaatttttgttaaaggatcttcattggagtggttgagtacctattaa 9983  T
Q  100 gtactattattaaaaa 115  Q
    ||| ||||||||||||    
T  9982 gtattattattaaaaa 9967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 449182 - 449069
Alignment:
Q  1 tattaaaataataattttcatggctattaaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaa 99  Q
    |||||||||||||||||| | | |||||||||||||||||||| ||||||||||| ||||| ||| || |||||||||||||| ||||||||| ||||||    
T  449182 tattaaaataataatttttacgactattaaataatatttgtgggaccctattagacatttt-tta-aggatctccattggagtggttgagtacatattaa 449085  T
Q  100 gtactattattaaaaa 115  Q
    ||||||||||||||||    
T  449084 gtactattattaaaaa 449069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 20683410 - 20683550
Alignment:
Q  54 atattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaa--------atgatgtgtccatatgaaacctatttaagac 145  Q
    |||||||| ||||| ||||||||||||||  |||||||||||||| |||||||||||||||        ||||||||||||| ||| |||||||||||||    
T  20683410 atattttgatagaggatctccattggagtgattgagtacctattaggtactattattaaaaaaaaaaaaatgatgtgtccatgtgagacctatttaagac 20683509  T
Q  146 ctcaaaattgagggtctttattatggatgctcttagggcac 186  Q
    ||||||  ||||||||| |||| ||||||||||| ||||||    
T  20683510 ctcaaatgtgagggtctctattgtggatgctcttggggcac 20683550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 11916000 - 11916058
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  11916000 ttttgttagagggtctccattggagtggttgagtacctattaggtactattattaaaaa 11916058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 43302424 - 43302493
Alignment:
Q  111 aaaaatgatgtgtccatatgaaacctatttaagacctcaaaattgagggtctttattatggatgctctta 180  Q
    |||||||||||||| || ||  |||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  43302424 aaaaatgatgtgtcaatgtgggacctgtttaagacctcaaaattgagggtctctattgtggatgctctta 43302493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 11511976 - 11511918
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| ||||| ||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  11511976 ttttgatagaggatctctattggagtggttgagtacctattaggtactattattaaaaa 11511918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 27974486 - 27974421
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| ||||||||| ||| |||| |||| ||| |||||||| |||||||||||||||||||||||    
T  27974486 ttagacattttgttaaagagtctctattgaagtggttgagtatctattaagtactattattaaaaa 27974421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 28061015 - 28060950
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| ||||||||| ||| |||| |||| ||| |||||||| |||||||||||||||||||||||    
T  28061015 ttagacattttgttaaagagtctctattgaagtggttgagtatctattaagtactattattaaaaa 28060950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 43302352 - 43302413
Alignment:
Q  54 atattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||| ||||||| ||||  ||||||| |||||||||| |||||||||||||||||||||    
T  43302352 atattttattagagagtctctgttggagtggttgagtaccaattaagtactattattaaaaa 43302413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 7772850 - 7772792
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||| |||| ||||||||| ||| |||||||||||||||  |||||||||||||||    
T  7772850 ttttgttggagagtctccattgcagttgttgagtacctattagatactattattaaaaa 7772792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 4062630 - 4062512
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa------------tgatgtgtccatatgaaacctatttaaga 144  Q
    ||||||| |||  ||||||||| ||| |||||||||||||||  |||||||||||||||            |||||||||||| ||||| |  |||||||    
T  4062630 ttttgttggaggttctccattgtagttgttgagtacctattatatactattattaaaaaattataaaaaagtgatgtgtccatgtgaaatccgtttaaga 4062531  T
Q  145 cctcaaaattgagggtctt 163  Q
    |||||||||||||||||||    
T  4062530 cctcaaaattgagggtctt 4062512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 448872 - 448808
Alignment:
Q  51 tagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||| ||||||||||||| |||| |||| |||  ||||||||||||||  |||||||||||||||    
T  448872 tagacattttgttagagagtctctattgaagtgtttgagtacctattagatactattattaaaaa 448808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 45154442 - 45154487
Alignment:
Q  111 aaaaatgatgtgtccatatgaaacctatttaagacctcaaaattga 156  Q
    ||||||||||||||||| ||| |||| ||||||||||||| |||||    
T  45154442 aaaaatgatgtgtccatgtgagacctgtttaagacctcaagattga 45154487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 8433819 - 8433670
Alignment:
Q  42 ggaccctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa------------tgatgtgtccatat 129  Q
    |||||||||||||  ||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||            |||||||||||| |    
T  8433819 ggaccctattagaccttttgttagaggatctccattgaagtggttgagtacctattaagcactattattaaaaaattattaaaaagtgatgtgtccatgt 8433720  T
Q  130 gaaacctatttaagacctcaaaattgagggtctttattatggatgctctt 179  Q
    |  ||||||||||||||||||| ||||||||||  ||| |||||||||||    
T  8433719 gggacctatttaagacctcaaagttgagggtctccattgtggatgctctt 8433670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 33207583 - 33207494
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaat 116  Q
    ||||||||||| |||| |||| ||||||  |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  33207583 taaataatattggtgggacccaattagaccttttgttagagggtctccattggagtggttgagtacctattaagtactattattaaaaat 33207494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 39324159 - 39324071
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| |||| | || ||||||  |||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  39324159 taaataatattggtgggatccaattagaccttttgttatagggtctccattggagtggttgagtacctattaagtactattattaaaaa 39324071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 10933546 - 10933681
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattatt-----------aaaaatgatgtgtccatatgaaacctatttaagac 145  Q
    ||||| |||||||| ||||||| |||  ||||||||||||||||||||||||||           ||||||||||||||||| ||| |||  ||||||||    
T  10933546 ttttgatagagaatatccattgaagtgattgagtacctattaagtactattattaaaaaataaaaaaaaatgatgtgtccatgtgatacccgtttaagac 10933645  T
Q  146 ctcaaaattgagggtctttattatggatgctcttag 181  Q
    ||||||  |||| || || |||||||||||||||||    
T  10933646 ctcaaatgtgagagtgttcattatggatgctcttag 10933681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 37194286 - 37194374
Alignment:
Q  28 taaataatatttgtgga-ccctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||||| ||||| ||| || |||  |||||||||||  |||| |||||||| ||||||||||||||| ||||||||||||||||    
T  37194286 taaataatattggtggatcccgatcagaccttttgttagagggtctctattggagtggttgagtacctattaggtactattattaaaaa 37194374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 32534860 - 32534988
Alignment:
Q  28 taaataatatttgtggacccta-ttagatattttgttagagaatctc--cattggagtagttgagtacctattaagtactattattaaaaa--tgatgtg 122  Q
    ||||||||||| ||||| || | ||||| ||||||||||||  ||||  ||||||||| ||||||||||| ||| |||| |||||||||||  |||||||    
T  32534860 taaataatattggtggaaccaaattagacattttgttagagggtctctccattggagtggttgagtaccttttaggtaccattattaaaaaagtgatgtg 32534959  T
Q  123 tccatatgaaacctatttaagacctcaaa 151  Q
    || || ||| ||| ||| |||||||||||    
T  32534960 tcaatgtgagaccaattcaagacctcaaa 32534988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 25768216 - 25768281
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| |||||| ||||| |||| |||||||||||| |||||||||||| ||| ||||||||||||    
T  25768216 ttagacattttgatagaggatcttcattggagtagtcgagtacctattaggtattattattaaaaa 25768281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 33494783 - 33494726
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||  |||| |||||||||| ||||||||||||| ||||||||||||||||    
T  33494783 ttttgttagagg-tctctattggagtagctgagtacctattaggtactattattaaaaa 33494726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 606388 - 606333
Alignment:
Q  138 tttaagacctcaaaattgagggtctttattatggatgctcttagggcacttgttag 193  Q
    ||||||||||  ||||||| ||||| |||| |||||| ||||||||||||||||||    
T  606388 tttaagaccttcaaattgaaggtctctattgtggatggtcttagggcacttgttag 606333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 13417303 - 13417257
Alignment:
Q  69 atctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||| |||||||| ||||||||||||||| |||||||| |||||||    
T  13417303 atctctattggagtggttgagtacctattaggtactattgttaaaaa 13417257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 30471804 - 30471862
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||  ||||  ||||||| ||||||||||||||| ||||||| ||||||||    
T  30471804 ttttgttagagcgtctctgttggagtggttgagtacctattaggtactatcattaaaaa 30471862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 38037431 - 38037489
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||| |||| ||||||||  ||||||||||||||  || ||||||||||||    
T  38037431 ttttgttagagattctctattggagtgattgagtacctattagatattattattaaaaa 38037489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 4277469 - 4277396
Alignment:
Q  42 ggaccctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||| ||||||  |||||||||||  |||| ||| |||| ||||||||  ||||| ||||||||||||||||    
T  4277469 ggacccaattagaccttttgttagagggtctcaatttgagtggttgagtagttattaggtactattattaaaaa 4277396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 5367762 - 5367827
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||| |||||||| | | |||| |||||||| ||| | ||||||||| ||||||||||||||||    
T  5367762 ttagatcttttgttaaaaagtctctattggagtggttaactacctattatgtactattattaaaaa 5367827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 5495677 - 5495612
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||| ||||||| ||  || ||||| | ||||||||||| ||||||| ||||||||||||||||    
T  5495677 ttagatcttttgttggaagatatccatcgtagtagttgagtgcctattaggtactattattaaaaa 5495612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 13905925 - 13905884
Alignment:
Q  137 atttaagacctcaaaattgagggtctttattatggatgctct 178  Q
    ||||||||||||||| |||||||||| ||||||| |||||||    
T  13905925 atttaagacctcaaagttgagggtctctattatgaatgctct 13905884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 14639951 - 14639992
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctatta 98  Q
    ||||| ||||||||||| |||||||| |||||||||||||||    
T  14639951 ttttgatagagaatctctattggagtggttgagtacctatta 14639992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 2552501 - 2552565
Alignment:
Q  51 tagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||| ||||||||||||  | ||||||| ||| |||||||| |||||| || |||||||||||||    
T  2552501 tagacattttgttagagggtatccattgtagtggttgagtatctattaggtgctattattaaaaa 2552565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 13905990 - 13905958
Alignment:
Q  84 gttgagtacctattaagtactattattaaaaat 116  Q
    |||||||||||||||| ||||||||||||||||    
T  13905990 gttgagtacctattaaatactattattaaaaat 13905958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 26824 - 26669
Alignment:
Q  28 taaataatatttgtg-gaccctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattatta-aaaatgatgtgtcc 125  Q
    ||||||||||| ||| ||||| ||||||  |||||||||||  |||| |||||||| ||||| ||||||||| |||||||||||| |||||||||||||     
T  26824 taaataatattggtgagacccaattagaccttttgttagagggtctctattggagtggttgaatacctattaggtactattattaaaaaatgatgtgtca 26725  T
Q  126 atatgaaacctatttaagacctcaaaattgagggtctttattatggatgctcttag 181  Q
    || ||| | ||||||||| |||||||  |||| ||||  ||| | |||||||||||    
T  26724 atgtgagatctatttaaggcctcaaagatgagagtctccattgtagatgctcttag 26669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 2336 - 2423
Alignment:
Q  28 taaataatatttgtg-gaccctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaa 114  Q
    ||||||||||| ||| ||||| ||||||  |||||||||||  ||||||||||||| ||||||||||||||| |||||||||||||||    
T  2336 taaataatattggtgcgacccaattagaccttttgttagagggtctccattggagtggttgagtacctattaggtactattattaaaa 2423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 29383521 - 29383433
Alignment:
Q  28 taaataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||||||| | || ||||||  ||||||||||| |||||| |||||||  |||||||||||||||||| ||||||||||||    
T  29383521 taaataatatttgtgggatccaattagaccttttgttagaggatctccgttggagtgattgagtacctattaagtattattattaaaaa 29383433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 6793987 - 6793901
Alignment:
Q  30 aataatatttgtgg-accctattagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    ||||||||| |||| |||| ||||||  |||||||||||  | ||||||||||| ||||||||||||||| ||||||||||||||||    
T  6793987 aataatattggtgggacccaattagaccttttgttagagggtttccattggagtggttgagtacctattaggtactattattaaaaa 6793901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 378632 - 378690
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||  ||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  378632 ttttgttagagggtctccattggagtggtttagtacctattaggtactattattaaaaa 378690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 11703227 - 11703169
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||||||||||  |||| |||||||| ||||||||||||||| ||||||| ||||||||    
T  11703227 ttttgttagagggtctctattggagtggttgagtacctattaggtactatcattaaaaa 11703169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 4405756 - 4405690
Alignment:
Q  50 ttagatattttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaat 116  Q
    ||||| |||||| | ||| |||||||||||||| |||||||| || ||| ||||| |||||||||||    
T  4405756 ttagacattttgatggaggatctccattggagtggttgagtagctgttaggtactcttattaaaaat 4405690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 30250384 - 30250442
Alignment:
Q  57 ttttgttagagaatctccattggagtagttgagtacctattaagtactattattaaaaa 115  Q
    |||| |||||| ||||| |||||||| ||||| |||||||||| || ||||||||||||    
T  30250384 ttttcttagaggatctctattggagttgttgattacctattaaatagtattattaaaaa 30250442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 33099573 - 33099520
Alignment:
Q  125 catatgaaacctatttaagacctcaaaattgagggtctttattatggatgctct 178  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  33099573 catatgagacccgtttaagacctcaaaattgagggtctccattgtggatgctct 33099520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 4874 - 4817
Alignment:
Q  56 attttgttagagaatctccattggagtagttgagtacctattaagtactattattaaa 113  Q
    |||||||||||||||||| |||||||| ||||  ||||||||| ||||||||||||||    
T  4874 attttgttagagaatctctattggagtggttggatacctattaggtactattattaaa 4817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 400 - 441
Alignment:
Q  137 atttaagacctcaaaattgagggtctttattatggatgctct 178  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  400 atttaagacctcaagattgagggtctctattatagatgctct 441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University