View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3813_low_67 (Length: 232)
Name: NF3813_low_67
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_67 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 44034364 - 44034545
Alignment:
| Q |
17 |
aacctgtgcaggttaagggaatccatttatggcacaactttaaggtttattctttttcagatgtttattctcctatatgtgtaaacaatccattctggta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44034364 |
aacctgtgcaggttaagggaatccatttatggcacaactttaaggtttattctttttcagatgtttattctcctatatgtgtaaacaatccattctggta |
44034463 |
T |
|
| Q |
117 |
taaatacacatcctctaatctcaaatttctacaaaccaaatcaaactcacttaaatcatca--at-atatagctacctacct |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
44034464 |
taaatacacatcctctaatctcaaatttctacaaaccaaatcaaactcacttaaatcatcatcataatatagctacctacct |
44034545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University