View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_68 (Length: 229)
Name: NF3813_low_68
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4971987 - 4972205
Alignment:
| Q |
1 |
atcacaacttgatgatgattgttcatcatctctgacaacattatttgcctgcatcaatagaatgtttggtcactggtaagcaaatcttcattttttcctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4971987 |
atcacaacttgatgatgattgttcatcatctctgacaacattatttgcctgcatcaatagaaagtttggtcactggtaagcaaatcttcattttttcctc |
4972086 |
T |
|
| Q |
101 |
agcaagtaaccttggaaattttattgcatgtttaagcaaatcttgctgtgacaacttcatcatttgttgcatttttatcttgttaagaaagtatgcatat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4972087 |
agcaagtaaccttggaaatttcattgcatgtttaagcaaatcttgctgtgacaacttcatcatttgttgcatttttatcttgttaagaaagtatgcatat |
4972186 |
T |
|
| Q |
201 |
tactagtttgtaatctctg |
219 |
Q |
| |
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|||||||||||||||||| |
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| T |
4972187 |
gactagtttgtaatctctg |
4972205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4989895 - 4990113
Alignment:
| Q |
1 |
atcacaacttgatgatgattgttcatcatctctgacaacattatttgcctgcatcaatagaatgtttggtcactggtaagcaaatcttcattttttcctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4989895 |
atcacaacttgatgatgattgttcatcatctctgacaacattatttgcctgcatcaatagaaagtttggtcactggtaagcaaatcttcattttttcctc |
4989994 |
T |
|
| Q |
101 |
agcaagtaaccttggaaattttattgcatgtttaagcaaatcttgctgtgacaacttcatcatttgttgcatttttatcttgttaagaaagtatgcatat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989995 |
agcaagtaaccttggaaatttcattgcatgtttaagcaaatcttgctgtgacaacttcatcatttgttgcatttttatcttgttaagaaagtatgcatat |
4990094 |
T |
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| Q |
201 |
tactagtttgtaatctctg |
219 |
Q |
| |
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|||||||||||||||||| |
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| T |
4990095 |
gactagtttgtaatctctg |
4990113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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