View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_69 (Length: 227)
Name: NF3813_low_69
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 41824945 - 41824730
Alignment:
| Q |
1 |
aataagattaatttctatgaaaacgtaaaacttttttacacgtgcatccaataaaatcgaccacgatgctactttgttaaattatattctaaaatatcta |
100 |
Q |
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| T |
41824945 |
aataagattaatttctatgaaaacgtaaaacttttttacacgtgcatccaataaaatcaaccacgatgctactttgttaaattatattctaaaatatcta |
41824846 |
T |
|
| Q |
101 |
cattgtgagatataatttgatgcatgtgtaaaaacattttatgccgacagtgtatacaaattaaattctaaaactgttatccacttctatagttgcaatc |
200 |
Q |
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| T |
41824845 |
cattgtgagatataatttgatgcatgtgtaaaaacattttacgccgacagtgtatacaaattaaattctaaaactgttatccacttctatagttgcaatc |
41824746 |
T |
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| Q |
201 |
aatggtcctatctcct |
216 |
Q |
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||||||||| |||||| |
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| T |
41824745 |
aatggtcctgtctcct |
41824730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 45161517 - 45161550
Alignment:
| Q |
25 |
gtaaaacttttttacacgtgcatccaataaaatc |
58 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
45161517 |
gtaaaacttttttacacgtgcatccaatcaaatc |
45161550 |
T |
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