View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3813_low_8 (Length: 585)
Name: NF3813_low_8
Description: NF3813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3813_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 48538476 - 48538181
Alignment:
| Q |
13 |
atcatcatagtaataatcaaaataacaatgggggtaaaaagggtatgtcgataccagttgctggtggtggtggtaatgttcaagctatgaacaatggatt |
112 |
Q |
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| T |
48538476 |
atcataatagtaataatcaaaataacaatgggggtaaaaagggtatgtcgataccagttgctggtggtggtggtaatgttcaagctatgaacaatggatt |
48538377 |
T |
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| Q |
113 |
tcaaaaaatgatgggtggcggaggtggtcatcctcaccctgctatggatggtggaggtaataatgtgggaccaatgagtatgccaatgaaccaaatgggt |
212 |
Q |
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| T |
48538376 |
tcaaaaaatgatgggtggcggaggtggtcatcctcaccctgctatggatggtggaggtaataatgtgggaccaatgagtatgccaatgaaccaaatgggt |
48538277 |
T |
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| Q |
213 |
ggtaacattcctgctgttcaaggtctaccggctggcggaggatactttcaaggtggtggtggtccaggcgcggaaatgatgtcgggcaatccttat |
308 |
Q |
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| T |
48538276 |
ggtaacattcctgctgttcaaggtctaccggctggcggaggatactttcaaggtggtggtggtccaggcgcggaaatgatgtcgggcaatccttat |
48538181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 351 - 569
Target Start/End: Complemental strand, 48538135 - 48537917
Alignment:
| Q |
351 |
ttaatggctgttgcaatgatgaaccaaaaacgtgctgaaatggtggaaaatgatcaaagatttcagcagccaatgatgtacgcaaggccacctcctgcgg |
450 |
Q |
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| T |
48538135 |
ttaatggctgctgcaatgatgaatcaacaacgtgctgcaatggtggaaaatgatcaaagatttcagcagccaatgatgtacgcaaggccacctcctgcgg |
48538036 |
T |
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| Q |
451 |
tgaattacatgtatcctccttacccttatcctcctccagatccttactcacatgctttcagtgatgagaacacttccagctgcaatattatgtgatgtga |
550 |
Q |
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| T |
48538035 |
tgaattacatatatcctccttacccttatcctcctccagatccttactcacatgctttcagtgatgagaacacttccagttgcaatattatgtgatgtga |
48537936 |
T |
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| Q |
551 |
ttcatctaaaccaacaatg |
569 |
Q |
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| T |
48537935 |
ttaatctaaaccaacaatg |
48537917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 351 - 546
Target Start/End: Complemental strand, 48572435 - 48572240
Alignment:
| Q |
351 |
ttaatggctgttgcaatgatgaaccaaaaacgtgctgaaatggtggaaaatgatcaaagatttcagcagccaatgatgtacgcaaggccacctcctgcgg |
450 |
Q |
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| T |
48572435 |
ttaatggctgctgcaatgatgaaccaacaacgtgctgcaatggtggaaaatgatcaaagatttcagcagccaatgatgtatgcaaggccacctcctgagg |
48572336 |
T |
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| Q |
451 |
tgaattacatgtatcctccttacccttatcctcctccagatccttactcacatgctttcagtgatgagaacacttccagctgcaatattatgtgat |
546 |
Q |
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| T |
48572335 |
tgaattacatgtatcctccttacccttatcctcctccagatccttactcacatgctttcagtgatgagaacacttccagctgcaatgtcatgtgat |
48572240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 48572797 - 48572532
Alignment:
| Q |
19 |
atagtaataatcaaaataacaatgggggtaaaaagggtatgtcgataccagttgctggtggtggtggtaatgttcaagctatgaacaatggatttcaaaa |
118 |
Q |
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| T |
48572797 |
atagtaataatcaaaataacgatgggggtaagaagggtatgtcgataccagttgctggtggtggtggtaatgttcaagctatgaacaatggatttcataa |
48572698 |
T |
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| Q |
119 |
aatgatgggtggcgga---ggtggtcatcctcaccctgctatggatggtggaggtaataatgtgggaccaatgagt---atgccaatgaaccaaatgggt |
212 |
Q |
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|||||||||||| ||| |||||||| |||| |||| ||||| ||||||||| ||||| |||| |||||| || ||||| ||||||| ||||||| |
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| T |
48572697 |
aatgatgggtggtggaggtggtggtcaatctcatcctggtatgggtggtggaggaaataacatggggccaatgggtcccatgcctatgaaccgaatgggt |
48572598 |
T |
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| Q |
213 |
ggtaacattcctgctgttcaaggtctaccggctggc---ggaggatactttcaaggtggtggtggt |
275 |
Q |
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| T |
48572597 |
ggtaacattcctgctgttcaaggtctaccggcaggcggaggaggatactttcaaggtggtggtggt |
48572532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 48572537 - 48572493
Alignment:
| Q |
264 |
ggtggtggtggtccaggcgcggaaatgatgtcgggcaatccttat |
308 |
Q |
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| T |
48572537 |
ggtggtggtggtccaggcccggaaatgatgcaggggaatccttat |
48572493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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