View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3814_high_11 (Length: 346)

Name: NF3814_high_11
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3814_high_11
NF3814_high_11
[»] chr3 (14 HSPs)
chr3 (20-338)||(9336556-9336874)
chr3 (20-338)||(9329852-9330170)
chr3 (67-315)||(9395298-9395549)
chr3 (238-331)||(41980877-41980970)
chr3 (236-337)||(9756397-9756498)
chr3 (238-338)||(41985644-41985744)
chr3 (241-338)||(9494811-9494908)
chr3 (237-337)||(9695615-9695715)
chr3 (238-338)||(9343861-9343961)
chr3 (238-338)||(9407382-9407482)
chr3 (238-338)||(9448330-9448430)
chr3 (238-317)||(9485969-9486048)
chr3 (238-317)||(13864241-13864320)
chr3 (237-338)||(9617462-9617563)
[»] chr7 (1 HSPs)
chr7 (229-313)||(450102-450186)
[»] chr6 (7 HSPs)
chr6 (230-317)||(7025793-7025880)
chr6 (229-336)||(7041514-7041621)
chr6 (230-317)||(7029850-7029937)
chr6 (227-317)||(7012857-7012947)
chr6 (227-317)||(9170854-9170944)
chr6 (238-318)||(7046875-7046955)
chr6 (227-317)||(9159484-9159574)
[»] chr1 (2 HSPs)
chr1 (294-338)||(4439876-4439920)
chr1 (302-338)||(18991220-18991256)
[»] chr2 (1 HSPs)
chr2 (297-338)||(20694360-20694401)


Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 9336874 - 9336556
Alignment:
Q  20 caacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336874 caacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttg 9336775  T
Q  120 accactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggttgagagtagtgagtttgagttgttgctggtggatagatatgaaaatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9336774 accactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggtcgagagtagtgagtttgagttgttgctggtggatagatatgaaaatt 9336675  T
Q  220 attgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336674 attgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaa 9336575  T
Q  320 tggatgttcgttctctgct 338  Q
    |||||||||||| ||||||    
T  9336574 tggatgttcgttttctgct 9336556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 9330170 - 9329852
Alignment:
Q  20 caacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttg 119  Q
    ||||||| ||| ||| ||||||||||||| |||||||||||||||  |||||||||| ||||||||| ||||||||||| |||||||||||||||||||     
T  9330170 caacatgtcaaactcccatggaggaaatgtttgtgtttttaaagggcggccttgtgttgtagacaaaactggtcggactttcatgattggaccggattta 9330071  T
Q  120 accactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggttgagagtagtgagtttgagttgttgctggtggatagatatgaaaatt 219  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9330070 accactcatttgatcgctgagccggtgtttggtgggaaaagtaaattcttggtcgagagtagtgagtttgagttgttgctggtggatagatatgaaaatt 9329971  T
Q  220 attgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaa 319  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  9329970 atcgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaa 9329871  T
Q  320 tggatgttcgttctctgct 338  Q
    ||||| |||||| ||||||    
T  9329870 tggatattcgttttctgct 9329852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 67 - 315
Target Start/End: Complemental strand, 9395549 - 9395298
Alignment:
Q  67 ggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaatt 166  Q
    |||||||| ||||||||||| ||||||||||||| ||||||| | | || |||| |  |||||| || |||||||| ||| |||| ||  ||| ||||||    
T  9395549 ggccttgtatggtagacaaaactggtcggactgttatgattgaatcagacttgagctatcattttatagctgagcctgtgattggcggagaaagtaaatt 9395450  T
Q  167 cttggttgagagtagtgagtttgagttgttgctggtggatagatatgaaaattatt---gtgttcctgtatggattgatgtgtttaggcttgatgagaaa 263  Q
    |||||| |||| |||||| ||| |||||||||| ||||||| |||| ||||| ||    |||||  |||| ||||||||||||||||||||||||||||     
T  9395449 cttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgatcgtgttattgtaaggattgatgtgtttaggcttgatgagaag 9395350  T
Q  264 gagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgg 315  Q
     |||||| |||||| ||| |||| ||||||||||||  ||||||||||||||    
T  9395349 cagaaaaagtgggtgaagttgactaatttaggagatttggttttgttcttgg 9395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 41980970 - 41980877
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgtt 331  Q
    |||||||||||||||||| | |||||||||| |  ||||||||| |||||| |||||| ||||  |||||||||||||||||||||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgtt 41980877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 337
Target Start/End: Complemental strand, 9756498 - 9756397
Alignment:
Q  236 gattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctct 335  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||  |||||| || |||| ||||||||| || ||| | || ||||| ||||||    
T  9756498 gattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcattctct 9756399  T
Q  336 gc 337  Q
    ||    
T  9756398 gc 9756397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 41985744 - 41985644
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 337  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  ||||||||||||||||||||||||||||| |||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  338 t 338  Q
    |    
T  41985644 t 41985644  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 9494811 - 9494908
Alignment:
Q  241 atgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgct 338  Q
    ||||| |||||||||||||||| ||||  || ||||| ||  ||| || |||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  9494811 atgtgcttaggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgct 9494908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 9695615 - 9695715
Alignment:
Q  237 attgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctg 336  Q
    |||||||| || |||||||||||||| ||||| | |||||||||| |||| |||||||| |||| ||||||||| |||||| | |  |||||||||||||    
T  9695615 attgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctg 9695714  T
Q  337 c 337  Q
    |    
T  9695715 c 9695715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 9343961 - 9343861
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 337  Q
    |||||||||||| |||||||||||  ||||| | |||||| ||| | || | |||||| ||||  ||||||||||||||||||| ||||||||| |||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  338 t 338  Q
    |    
T  9343861 t 9343861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 9407482 - 9407382
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 337  Q
    ||||||||||||| ||||| |||||  | ||||| ||||| ||| ||| || |||||| |||| |||||||||||| | |||||||||||| || |||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  338 t 338  Q
    |    
T  9407382 t 9407382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 9448430 - 9448330
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 337  Q
    |||||||||||| |||| ||||||| ||||| |  ||||| ||| | || | |||||| ||||  |||||||||||||||||||  |||||||| |||||    
T  9448430 ttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgc 9448331  T
Q  338 t 338  Q
    |    
T  9448330 t 9448330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 9485969 - 9486048
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    ||||||||||||||||||||||||| ||||| | ||||||  || |||  ||||| || |||| ||||||||| ||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggg 9486048  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 13864320 - 13864241
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    ||||||||||||||||||||||||  ||||||| ||||||  || |||  ||||| || |||| ||||||||| ||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggtggaggtgagaaatttgggggatagggttttgtttttgggg 13864241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 9617462 - 9617563
Alignment:
Q  237 attgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctg 336  Q
    ||||| ||||| ||| || ||||||||||||| |  ||||| ||| |||  |||||||| |||| |||||||||| | | |||||||||||| || ||||    
T  9617462 attgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctg 9617561  T
Q  337 ct 338  Q
    ||    
T  9617562 ct 9617563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 450102 - 450186
Alignment:
Q  229 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttctt 313  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||   ||||||||||    
T  450102 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttctt 450186  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 7025880 - 7025793
Alignment:
Q  230 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    |||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||| |||||| ||||||||||| ||||||||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 336
Target Start/End: Complemental strand, 7041621 - 7041514
Alignment:
Q  229 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttc 328  Q
    |||||||||||||| ||||||  ||| ||||||| ||||| | |||||| ||| |||| | |||||| |||| |||||||||||||||  | | ||||||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 7041522  T
Q  329 gttctctg 336  Q
    ||||||||    
T  7041521 gttctctg 7041514  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 7029937 - 7029850
Alignment:
Q  230 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    |||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||| |||||| ||| || |||| ||||||||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 7012947 - 7012857
Alignment:
Q  227 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    ||||||| | |||||| |||||| |||| ||||||| ||||| | |||||| ||| |||| | ||||||||||| | ||||||||||||||    
T  7012947 tcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 9170944 - 9170854
Alignment:
Q  227 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    ||||||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||  | |||| |||||| |||| ||||||||||||||||    
T  9170944 tcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 7046955 - 7046875
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggga 318  Q
    ||||| |||||| |||| ||||||| ||||| | |||||| ||| | |||| |||||| ||||| ||||||||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttgggga 7046875  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 9159484 - 9159574
Alignment:
Q  227 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    ||||||| |||||||| |||||| |||| | ||||| ||||| | |||||| ||  | |||| |||||| |||| ||||||||||||||||    
T  9159484 tcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 4439920 - 4439876
Alignment:
Q  294 ggagataaggttttgttcttggggaatggatgttcgttctctgct 338  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||    
T  4439920 ggagatagggttttgtttttggggaatggatgttcgttttctgct 4439876  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 18991256 - 18991220
Alignment:
Q  302 ggttttgttcttggggaatggatgttcgttctctgct 338  Q
    |||||||||||||||||||||||||||||| ||||||    
T  18991256 ggttttgttcttggggaatggatgttcgttttctgct 18991220  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 20694360 - 20694401
Alignment:
Q  297 gataaggttttgttcttggggaatggatgttcgttctctgct 338  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  20694360 gatagggttttgtttttggggaatggatgttcgttttctgct 20694401  T

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