View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3814_high_12 (Length: 344)
Name: NF3814_high_12
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 6060670 - 6060355
Alignment:
| Q |
13 |
ctgtgattcaaaaagaggtaactaatctcttttcgcgctttttcaatgtgcaagatagggttatggttagtatgtttgaagatatagttgagagactaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6060670 |
ctgtgattcaaaaagaggtaactaatctcttttcgcgctttttcaatgtgcaagataggggtatggttagtaagtttgaagatatagttgagagactaga |
6060571 |
T |
|
| Q |
113 |
atatatcttgaaactcaaagacagtcttgaactcaaagagattgtagtggagaatttgtcatataaaactccatcaacatctctccaagacggatcacgt |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
6060570 |
atatattttgaaactcaaagacagtcttgaactcaaagagattgtagtggagaatttgtcatataaaactccatcaacatctctccaagacgaatctcgt |
6060471 |
T |
|
| Q |
213 |
gtgtatggcagggacaaagacaaggagggcatcatcaagtttttgttagatgataacagtgatgatggtgaagaagtgattgtgatacctattgtgggaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6060470 |
gtgtatggcagggacaaagacaaggagggcatcatcaagtttttgttagatgataacagtgataatggtgaagaagtgattgtgatacctattgtgggaa |
6060371 |
T |
|
| Q |
313 |
tgggaggggtaggaaa |
328 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6060370 |
tgggaggggtaggaaa |
6060355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University