View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3814_high_2 (Length: 647)

Name: NF3814_high_2
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3814_high_2
NF3814_high_2
[»] chr7 (1 HSPs)
chr7 (1-630)||(47053706-47054335)


Alignment Details
Target: chr7 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Original strand, 47053706 - 47054335
Alignment:
Q  1 acacacgagccaagctggaagagcacacactcttctctaagaagaaactaaaccctaatagagcttagggaacttagacgacgctgagttatgaaattct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47053706 acacacgagccaagctggaagagcacacactcttctctaagaagaaactaaaccctaacagagcttagggaacttagacgacgctgagttatgaaattct 47053805  T
Q  101 aagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaacattggcagcttcatcagtctacaaaatgcttgtggcagcgctagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053806 aagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaacattggcagcttcatcagtctacaaaatgcttgtggcagcgctagct 47053905  T
Q  201 gacatgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttgtccaaggtagaggcatcatagtaaagttcctaaatagtttatttct 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47053906 gacacgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttgtccaaggtagaggcatcatagtaaagttcctaaatagattatttct 47054005  T
Q  301 actttatagggacatagtcatggcacatgatcaacactaaaaattttaaccttgaagcattggaaagtaattaggagggaatggttttcatctgggtgag 400  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47054006 actttatagggacatagtcatggcacatgatcaacactaaaatttttaaccttgaagcattggaaagtaattaggagggaatggttttcatctgggtgag 47054105  T
Q  401 aatgtagagaagaaaggggacgaaggtgatagaagtagaattatttacatctgataccaaatgaaatattaaagcaaaacattcttactctcaaccatga 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47054106 aatgtagagaagaaaggggacgaaggtgatagaagtagaattatttacatctgataccaaatgaaatattaaagcaaaacattcttactctcaaccatga 47054205  T
Q  501 atcgtatatcaacttgaaactaaagaacctaaatgcaaactaacacagaataaaagtaacataattaactactttcaaaggagattaacacttctgttta 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47054206 atcgtatatcaacttgaaactaaagaacctaaatgcaaactaacacagaataaaagtaacataattaactactttcaaaggagattaacacttctgttta 47054305  T
Q  601 tagttgattttgaataaaaaatgcaaatat 630  Q
    ||||||||||||||||||||||||||||||    
T  47054306 tagttgattttgaataaaaaatgcaaatat 47054335  T

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