View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3814_high_24 (Length: 241)
Name: NF3814_high_24
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 2875928 - 2875719
Alignment:
| Q |
14 |
cagagacagagccaacaaataacttcaaactatgcatcaaaataattgatcaatgttttcttgttaaacacagttgtaatgattaaaagaatgccaagat |
113 |
Q |
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| T |
2875928 |
cagagacagagccaacaaataacttcaaactatgcatcaaaataattgatcaatgttttcttgttaaacacagttgtaatgattaaaagaatgccaagat |
2875829 |
T |
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| Q |
114 |
agtatagtgacttttatctcttacaacaacactgattcatttgcaataagattttttgtctgagaaactagcacaataagctgcttatcaattgtgatct |
213 |
Q |
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| T |
2875828 |
agtatagtgacttttatctcttacaacaacactgattcatttgcaataagattttttgtctgagaaactagcacaataagctgcttatcaattgtgatct |
2875729 |
T |
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| Q |
214 |
agcataacct |
223 |
Q |
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|||||||||| |
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| T |
2875728 |
agcataacct |
2875719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 2858393 - 2858325
Alignment:
| Q |
69 |
ttttcttgttaaacacagttgtaatgattaaaagaatgccaagatagtatagtgacttttatctcttac |
137 |
Q |
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| T |
2858393 |
ttttctagttaaacacaattgtaataattaaaagaatggtaagatagaacagtgaattttatctcttac |
2858325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 2847046 - 2847011
Alignment:
| Q |
22 |
gagccaacaaataacttcaaactatgcatcaaaata |
57 |
Q |
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| T |
2847046 |
gagccaacaattaacttcaaactatgcatcaaaata |
2847011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 2858883 - 2858848
Alignment:
| Q |
22 |
gagccaacaaataacttcaaactatgcatcaaaata |
57 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
2858883 |
gagccaacaattaacttcaaactatgcatcaaaata |
2858848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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