View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3814_low_1 (Length: 694)

Name: NF3814_low_1
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3814_low_1
NF3814_low_1
[»] scaffold0237 (4 HSPs)
scaffold0237 (236-564)||(1238-1576)
scaffold0237 (565-679)||(1087-1201)
scaffold0237 (15-167)||(1645-1799)
scaffold0237 (15-65)||(3010-3060)
[»] chr6 (8 HSPs)
chr6 (236-564)||(29845034-29845372)
chr6 (565-679)||(29844883-29844997)
chr6 (15-167)||(29845441-29845594)
chr6 (416-550)||(29826326-29826464)
chr6 (250-310)||(29212558-29212617)
chr6 (259-302)||(24268680-24268723)
chr6 (378-409)||(29902110-29902141)
chr6 (15-65)||(29856808-29856858)
[»] chr8 (3 HSPs)
chr8 (15-74)||(28524812-28524872)
chr8 (514-563)||(32520151-32520200)
chr8 (18-65)||(24198997-24199045)
[»] chr7 (2 HSPs)
chr7 (19-111)||(2677799-2677892)
chr7 (17-76)||(24844625-24844685)
[»] chr2 (2 HSPs)
chr2 (16-119)||(12005007-12005110)
chr2 (514-558)||(33492641-33492685)
[»] chr5 (1 HSPs)
chr5 (17-65)||(12445428-12445476)
[»] chr3 (1 HSPs)
chr3 (19-74)||(40205936-40205992)
[»] chr1 (2 HSPs)
chr1 (18-65)||(1001217-1001265)
chr1 (16-91)||(26518146-26518222)


Alignment Details
Target: scaffold0237 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 236 - 564
Target Start/End: Complemental strand, 1576 - 1238
Alignment:
Q  236 aactacgagaatgtaatagtttcgaatttctatattctttttgaaattgaagtacatacttttatttgtagatta----------agtttacaatttgat 325  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||    
T  1576 aactacgagaatgtaatagtttcgaatttccatattctttttgaaattgaagtacatacttttatttgtagattattgtagattaagtttacaatttgat 1477  T
Q  326 tttaaaaatgcaattacaaataaactaaaaaagttaaacgtaatttgtttatataaaattagatgaaaagttaaactcaagctttcaaactgctaacttg 425  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1476 tttaaaaatgcaattataaataaactaaaaaagttaaacgtaatttgtttatataaaattagatgaaaagttaaactcaagctttcaaactgctaacttg 1377  T
Q  426 tttggctatcatttcaaacttgggtacccactctactattgctttttcttcttatcatgttttaaattgttgcagctgctacgacgcatgttgcgacgcg 525  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1376 tttggctatcatttcaaacttgggtacccactctactattgttttttcttcttatcatgttttaaattgttgcagctgctacgacgcatgttgcgacgca 1277  T
Q  526 aaataattttaaattttcacaaataatataaagtgacat 564  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  1276 aaataattttaaattttcacaaataacataaagtgacat 1238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 565 - 679
Target Start/End: Complemental strand, 1201 - 1087
Alignment:
Q  565 agtttgatttcttttcttcaataaaggtatgtatattcataatctctaaatcatattggaatttggagttccggaattttaatttcttatggaaagattt 664  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1201 agtttgatttcttttcttcaataaaggtatgtatattcataatctctaaatcatattggaatttggagttccggaattttaatttcttatggaaagattt 1102  T
Q  665 gaaagaacatggttg 679  Q
    |||||||||||||||    
T  1101 gaaagaacatggttg 1087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 1799 - 1645
Alignment:
Q  15 cagagactaaactgataacggaagtgcaaattcaggattactttgtatttattcatgagttaaagaattttgtgataacaaggttctgagtcaaagatta 114  Q
    ||||||||||||||||||| ||||||||  || |||| ||||||||||||||||  |||||| ||| |||||||| | | |||||||||||||| |||||    
T  1799 cagagactaaactgataacagaagtgcacgtttaggactactttgtatttattcccgagttagagacttttgtgacagcgaggttctgagtcaaggatta 1700  T
Q  115 aagtgtctatttactcgcaattttatcaaactt--atgtttttaagcatcaaaag 167  Q
    ||||| |||||||||||||||||||||||||||   | |||||||||||||||||    
T  1699 aagtgactatttactcgcaattttatcaaactttattttttttaagcatcaaaag 1645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 3060 - 3010
Alignment:
Q  15 cagagactaaactgataacggaagtgcaaattcaggattactttgtattta 65  Q
    ||||||||||||||||||||||| ||||  || |||| |||||||||||||    
T  3060 cagagactaaactgataacggaaatgcacgtttaggactactttgtattta 3010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 236 - 564
Target Start/End: Complemental strand, 29845372 - 29845034
Alignment:
Q  236 aactacgagaatgtaatagtttcgaatttctatattctttttgaaattgaagtacatacttttatttgtagatta----------agtttacaatttgat 325  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||    
T  29845372 aactacgagaatgtaatagtttcgaatttccatattctttttgaaattgaagtacatacttttatttgtagattattgtagattaagtttacaatttgat 29845273  T
Q  326 tttaaaaatgcaattacaaataaactaaaaaagttaaacgtaatttgtttatataaaattagatgaaaagttaaactcaagctttcaaactgctaacttg 425  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29845272 tttaaaaatgcaattataaataaactaaaaaagttaaacgtaatttgtttatataaaattagatgaaaagttaaactcaagctttcaaactgctaacttg 29845173  T
Q  426 tttggctatcatttcaaacttgggtacccactctactattgctttttcttcttatcatgttttaaattgttgcagctgctacgacgcatgttgcgacgcg 525  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29845172 tttggctatcatttcaaacttgggtacccactctactattgttttttcttcttatcatgttttaaattgttgcagctgctacgacgcatgttgcgacgca 29845073  T
Q  526 aaataattttaaattttcacaaataatataaagtgacat 564  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  29845072 aaataattttaaattttcacaaataacataaagtgacat 29845034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 565 - 679
Target Start/End: Complemental strand, 29844997 - 29844883
Alignment:
Q  565 agtttgatttcttttcttcaataaaggtatgtatattcataatctctaaatcatattggaatttggagttccggaattttaatttcttatggaaagattt 664  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29844997 agtttgatttcttttcttcaataaaggtatgtatattcataatctctaaatcatattggaatttggagttccggaattttaatttcttatggaaagattt 29844898  T
Q  665 gaaagaacatggttg 679  Q
    |||||||||||||||    
T  29844897 gaaagaacatggttg 29844883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 29845594 - 29845441
Alignment:
Q  15 cagagactaaactgataacggaagtgcaaattcaggattactttgtatttattcatgagttaaagaattttgtgataacaaggttctgagtcaaagatta 114  Q
    ||||||||||||||||||| ||||||||  || |||| ||||||||||||||||  |||||| ||| |||||||| | | |||||||||||||| |||||    
T  29845594 cagagactaaactgataacagaagtgcacgtttaggactactttgtatttattcccgagttagagacttttgtgacagcgaggttctgagtcaaggatta 29845495  T
Q  115 aagtgtctatttactcgcaattttatcaaactta-tgtttttaagcatcaaaag 167  Q
    ||||| |||||||||||||||||||||||||||| | |||||||||||||||||    
T  29845494 aagtgactatttactcgcaattttatcaaacttattttttttaagcatcaaaag 29845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 416 - 550
Target Start/End: Original strand, 29826326 - 29826464
Alignment:
Q  416 tgctaacttgtttggctatcatttcaaacttgggtacccactcta----ctattgctttttcttcttatcatgttttaaattgttgcagctgctacgacg 511  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||     ||| |  | ||| |||||||||| ||||||| ||||||||||||||||||     
T  29826326 tgctaacttggctggatatcatttcaaacttgggtacccactcttgattctactcttgttttttcttatcatattttaaactgttgcagctgctacgaca 29826425  T
Q  512 catgttgcgacgcgaaataattttaaattttcacaaata 550  Q
    ||||||| |||| |||||||||||||||| | |||||||    
T  29826426 catgttgtgacgtgaaataattttaaattgtaacaaata 29826464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 29212558 - 29212617
Alignment:
Q  250 aatagtttcgaatttctatattctttttgaaattgaagtacatacttttatttgtagatta 310  Q
    ||||| || |||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  29212558 aataggtttgaatttttatattctttttgaaattgaagta-acacttttatttgtagatta 29212617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 24268680 - 24268723
Alignment:
Q  259 gaatttctatattctttttgaaattgaagtacatacttttattt 302  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||||    
T  24268680 gaatttctacattctttttgaaattgaagcacaaacttttattt 24268723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 409
Target Start/End: Complemental strand, 29902141 - 29902110
Alignment:
Q  378 ataaaattagatgaaaagttaaactcaagctt 409  Q
    ||||||||||||||||||||||||||||||||    
T  29902141 ataaaattagatgaaaagttaaactcaagctt 29902110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 29856858 - 29856808
Alignment:
Q  15 cagagactaaactgataacggaagtgcaaattcaggattactttgtattta 65  Q
    ||||||||||||||||||||||| ||||  || |||| |||||||||||||    
T  29856858 cagagactaaactgataacggaaatgcacgtttaggactactttgtattta 29856808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 28524872 - 28524812
Alignment:
Q  15 cagagactaaactgataacggaagtgcaaattc-aggattactttgtatttattcatgagt 74  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||||||||| || |||||    
T  28524872 cagagactaaaatgataacggaagtgcacattcaaggattactttgtatttaatcctgagt 28524812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 563
Target Start/End: Complemental strand, 32520200 - 32520151
Alignment:
Q  514 tgttgcgacgcgaaataattttaaattttcacaaataatataaagtgaca 563  Q
    ||||||| || ||||||||||||||||||||||||  |||||||||||||    
T  32520200 tgttgcggcgtgaaataattttaaattttcacaaactatataaagtgaca 32520151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 24199045 - 24198997
Alignment:
Q  18 agactaaactgataacggaagtgcaaattc-aggattactttgtattta 65  Q
    |||||||| |||||||||||||||| |||| | ||||||||||||||||    
T  24199045 agactaaagtgataacggaagtgcacattcaatgattactttgtattta 24198997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 2677799 - 2677892
Alignment:
Q  19 gactaaactgataacggaagtgcaaattcagg-attactttgtatttattcatgagttaaagaattttgtgataacaaggttctgagtcaaaga 111  Q
    |||||||||||||||| ||||||| ||| ||| | ||||||||||||| |||||||| | |||  ||||||| ||| |||| | ||||||||||    
T  2677799 gactaaactgataacgaaagtgcacatttagggaatactttgtatttaatcatgagtcatagacctttgtgacaacgaggtacagagtcaaaga 2677892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 24844685 - 24844625
Alignment:
Q  17 gagactaaactgataacggaagtgcaaattc-aggattactttgtatttattcatgagtta 76  Q
    |||||||||||||||| ||||||||| |||| | || ||||||||||||| || |||||||    
T  24844685 gagactaaactgataatggaagtgcacattcaatgactactttgtatttaatcctgagtta 24844625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 12005007 - 12005110
Alignment:
Q  16 agagactaaactgataacggaagtgcaaattca-ggattactttgtatttattcatgagttaaagaattttgtgataacaaggttctgagtcaaagatta 114  Q
    |||||||| |||||||| ||||||||| ||||| ||| || ||| |||||| |||||||||||| | |||||||| ||| | || | ||||| |||||||    
T  12005007 agagactatactgataatggaagtgcatattcaaggactattttatatttaatcatgagttaaaaacttttgtgagaacga-gtgcagagtcgaagatta 12005105  T
Q  115 aagtg 119  Q
    |||||    
T  12005106 aagtg 12005110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 514 - 558
Target Start/End: Complemental strand, 33492685 - 33492641
Alignment:
Q  514 tgttgcgacgcgaaataattttaaattttcacaaataatataaag 558  Q
    ||||||| || ||||||||||||||||||||||||  ||||||||    
T  33492685 tgttgcgccgtgaaataattttaaattttcacaaactatataaag 33492641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 12445428 - 12445476
Alignment:
Q  17 gagactaaactgataacggaagtgcaaattcaggattactttgtattta 65  Q
    ||||||||  |||||||||||||||| |||||||| |||||| ||||||    
T  12445428 gagactaaggtgataacggaagtgcacattcaggactactttatattta 12445476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 40205992 - 40205936
Alignment:
Q  19 gactaaactgataacggaagtgcaaattcag-gattactttgtatttattcatgagt 74  Q
    |||||||||||||||||||||||| |||||| || |||||||| |||| || |||||    
T  40205992 gactaaactgataacggaagtgcacattcagagactactttgtttttaatcgtgagt 40205936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 1001265 - 1001217
Alignment:
Q  18 agactaaactgataacggaagtgcaaattcag-gattactttgtattta 65  Q
    |||||||||||||||| |||||||| |||||| || |||||||||||||    
T  1001265 agactaaactgataacagaagtgcacattcagagactactttgtattta 1001217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 26518222 - 26518146
Alignment:
Q  16 agagactaaactgataacggaagtgcaaattca-ggattactttgtatttattcatgagttaaagaattttgtgata 91  Q
    |||||||||| ||||||||||| |||| ||||| | | ||||||||||||| || ||||| | ||| ||||||||||    
T  26518222 agagactaaattgataacggaactgcacattcatgaactactttgtatttaatcttgagtcagagacttttgtgata 26518146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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