View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3814_low_10 (Length: 355)
Name: NF3814_low_10
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 339
Target Start/End: Original strand, 4032782 - 4033110
Alignment:
| Q |
11 |
cagagaaagaattatcggagaggtcgagattctggagtcgtggaacggtgcagacagaagccggaaacggaccggagagattattccggtgaagaaaaat |
110 |
Q |
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| T |
4032782 |
cagagaaagaattatcggagaggtcgagattctggagtcgtggaacggtgcagacagaagccggaaacggaccggagagattattccggtgaagaaaaat |
4032881 |
T |
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| Q |
111 |
actatgaagtgcagtagcattaaacaactgaaccggaacaacaccatagaattcattatcatgaagattaagacgtcgaagatagcgaagcatgccgagc |
210 |
Q |
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| T |
4032882 |
actatgaagtgcagtagcattaaacaactgaaccggaacaacaccatagaattcattatcatgaagattaagacgtcgaagatagcgaagcatgccgagc |
4032981 |
T |
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| Q |
211 |
tcagacggaatgtatccctggagagattttccggcgagtgcaattccaactacacgcggctccggtacaccggatatattcgcacaggagattcctgacc |
310 |
Q |
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| T |
4032982 |
tcagacggaatgtatccctggagagattttccggcgagtgcaattccaactacacgcggctccggtacaccggatatattcgcacaggatattcctgacc |
4033081 |
T |
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| Q |
311 |
atccgcaggggtaggaatctcctccgttc |
339 |
Q |
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| T |
4033082 |
atccgcaggggtaggaatctcctccgttc |
4033110 |
T |
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