View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3814_low_11 (Length: 349)
Name: NF3814_low_11
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 7554100 - 7554417
Alignment:
| Q |
13 |
ataaaagaaacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtnnnnnnngaaa |
112 |
Q |
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| T |
7554100 |
ataaaagaaacactacagagaatacaaagttataacattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtaaaaaaagaaa |
7554199 |
T |
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| Q |
113 |
catttgacattttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttcgtaactcca |
212 |
Q |
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| T |
7554200 |
aatttgacattttagagtttgaacttcggcagagcatttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttcgtaactcca |
7554299 |
T |
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| Q |
213 |
atcccatgcaggcggagcttctatccttctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattctgcaaatta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554300 |
atcccatgcaggcggagcttctatccttctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattctgcaaatta |
7554399 |
T |
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| Q |
313 |
atctctttgagtagcgtg |
330 |
Q |
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| T |
7554400 |
atctctttgagtagcgtg |
7554417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 3438824 - 3438786
Alignment:
| Q |
239 |
ttctcaatgatggccttgaaactaccatctcgtcaacaa |
277 |
Q |
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| T |
3438824 |
ttctcaatgatggctttgaaaataccatctcgtcaacaa |
3438786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 9411195 - 9411235
Alignment:
| Q |
241 |
ctcaatgatggccttgaaactaccatctcgtcaacaatatt |
281 |
Q |
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| T |
9411195 |
ctcaatgacggccttgaaaataccatatcgtcaacaatatt |
9411235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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