View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3814_low_12 (Length: 346)

Name: NF3814_low_12
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3814_low_12
NF3814_low_12
[»] chr3 (14 HSPs)
chr3 (20-338)||(9336556-9336874)
chr3 (20-338)||(9329852-9330170)
chr3 (67-315)||(9395298-9395549)
chr3 (238-331)||(41980877-41980970)
chr3 (236-337)||(9756397-9756498)
chr3 (238-338)||(41985644-41985744)
chr3 (241-338)||(9494811-9494908)
chr3 (237-337)||(9695615-9695715)
chr3 (238-338)||(9343861-9343961)
chr3 (238-338)||(9407382-9407482)
chr3 (238-338)||(9448330-9448430)
chr3 (238-317)||(9485969-9486048)
chr3 (238-317)||(13864241-13864320)
chr3 (237-338)||(9617462-9617563)
[»] chr7 (1 HSPs)
chr7 (229-313)||(450102-450186)
[»] chr6 (7 HSPs)
chr6 (230-317)||(7025793-7025880)
chr6 (229-336)||(7041514-7041621)
chr6 (230-317)||(7029850-7029937)
chr6 (227-317)||(7012857-7012947)
chr6 (227-317)||(9170854-9170944)
chr6 (238-318)||(7046875-7046955)
chr6 (227-317)||(9159484-9159574)
[»] chr1 (2 HSPs)
chr1 (294-338)||(4439876-4439920)
chr1 (302-338)||(18991220-18991256)
[»] chr2 (1 HSPs)
chr2 (297-338)||(20694360-20694401)


Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 9336874 - 9336556
Alignment:
Q  20 caacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336874 caacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttg 9336775  T
Q  120 accactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggttgagagtagtgagtttgagttgttgctggtggatagatatgaaaatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9336774 accactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggtcgagagtagtgagtttgagttgttgctggtggatagatatgaaaatt 9336675  T
Q  220 attgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336674 attgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaa 9336575  T
Q  320 tggatgttcgttctctgct 338  Q
    |||||||||||| ||||||    
T  9336574 tggatgttcgttttctgct 9336556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 9330170 - 9329852
Alignment:
Q  20 caacatgccaacctctcatggaggaaatgcttgtgtttttaaaggatggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttg 119  Q
    ||||||| ||| ||| ||||||||||||| |||||||||||||||  |||||||||| ||||||||| ||||||||||| |||||||||||||||||||     
T  9330170 caacatgtcaaactcccatggaggaaatgtttgtgtttttaaagggcggccttgtgttgtagacaaaactggtcggactttcatgattggaccggattta 9330071  T
Q  120 accactcatttgatcgctgagccggtgtttggtgggcaaaataaattcttggttgagagtagtgagtttgagttgttgctggtggatagatatgaaaatt 219  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9330070 accactcatttgatcgctgagccggtgtttggtgggaaaagtaaattcttggtcgagagtagtgagtttgagttgttgctggtggatagatatgaaaatt 9329971  T
Q  220 attgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaa 319  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  9329970 atcgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaa 9329871  T
Q  320 tggatgttcgttctctgct 338  Q
    ||||| |||||| ||||||    
T  9329870 tggatattcgttttctgct 9329852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 67 - 315
Target Start/End: Complemental strand, 9395549 - 9395298
Alignment:
Q  67 ggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttgaccactcatttgatcgctgagccggtgtttggtgggcaaaataaatt 166  Q
    |||||||| ||||||||||| ||||||||||||| ||||||| | | || |||| |  |||||| || |||||||| ||| |||| ||  ||| ||||||    
T  9395549 ggccttgtatggtagacaaaactggtcggactgttatgattgaatcagacttgagctatcattttatagctgagcctgtgattggcggagaaagtaaatt 9395450  T
Q  167 cttggttgagagtagtgagtttgagttgttgctggtggatagatatgaaaattatt---gtgttcctgtatggattgatgtgtttaggcttgatgagaaa 263  Q
    |||||| |||| |||||| ||| |||||||||| ||||||| |||| ||||| ||    |||||  |||| ||||||||||||||||||||||||||||     
T  9395449 cttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgatcgtgttattgtaaggattgatgtgtttaggcttgatgagaag 9395350  T
Q  264 gagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgg 315  Q
     |||||| |||||| ||| |||| ||||||||||||  ||||||||||||||    
T  9395349 cagaaaaagtgggtgaagttgactaatttaggagatttggttttgttcttgg 9395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 41980970 - 41980877
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgtt 331  Q
    |||||||||||||||||| | |||||||||| |  ||||||||| |||||| |||||| ||||  |||||||||||||||||||||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgtt 41980877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 236 - 337
Target Start/End: Complemental strand, 9756498 - 9756397
Alignment:
Q  236 gattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctct 335  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||  |||||| || |||| ||||||||| || ||| | || ||||| ||||||    
T  9756498 gattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcattctct 9756399  T
Q  336 gc 337  Q
    ||    
T  9756398 gc 9756397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 41985744 - 41985644
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 337  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  ||||||||||||||||||||||||||||| |||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  338 t 338  Q
    |    
T  41985644 t 41985644  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 9494811 - 9494908
Alignment:
Q  241 atgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgct 338  Q
    ||||| |||||||||||||||| ||||  || ||||| ||  ||| || |||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  9494811 atgtgcttaggcttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgct 9494908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 9695615 - 9695715
Alignment:
Q  237 attgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctg 336  Q
    |||||||| || |||||||||||||| ||||| | |||||||||| |||| |||||||| |||| ||||||||| |||||| | |  |||||||||||||    
T  9695615 attgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctg 9695714  T
Q  337 c 337  Q
    |    
T  9695715 c 9695715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 9343961 - 9343861
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 337  Q
    |||||||||||| |||||||||||  ||||| | |||||| ||| | || | |||||| ||||  ||||||||||||||||||| ||||||||| |||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  338 t 338  Q
    |    
T  9343861 t 9343861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 9407482 - 9407382
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 337  Q
    ||||||||||||| ||||| |||||  | ||||| ||||| ||| ||| || |||||| |||| |||||||||||| | |||||||||||| || |||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  338 t 338  Q
    |    
T  9407382 t 9407382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 9448430 - 9448330
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctgc 337  Q
    |||||||||||| |||| ||||||| ||||| |  ||||| ||| | || | |||||| ||||  |||||||||||||||||||  |||||||| |||||    
T  9448430 ttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgc 9448331  T
Q  338 t 338  Q
    |    
T  9448330 t 9448330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 9485969 - 9486048
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    ||||||||||||||||||||||||| ||||| | ||||||  || |||  ||||| || |||| ||||||||| ||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggatatggttttgtttttgggg 9486048  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 13864320 - 13864241
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    ||||||||||||||||||||||||  ||||||| ||||||  || |||  ||||| || |||| ||||||||| ||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggtggaggtgagaaatttgggggatagggttttgtttttgggg 13864241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 9617462 - 9617563
Alignment:
Q  237 attgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttctctg 336  Q
    ||||| ||||| ||| || ||||||||||||| |  ||||| ||| |||  |||||||| |||| |||||||||| | | |||||||||||| || ||||    
T  9617462 attgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctg 9617561  T
Q  337 ct 338  Q
    ||    
T  9617562 ct 9617563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 450102 - 450186
Alignment:
Q  229 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttctt 313  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||   ||||||||||    
T  450102 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttctt 450186  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 7025880 - 7025793
Alignment:
Q  230 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    |||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||| |||||| ||||||||||| ||||||||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 336
Target Start/End: Complemental strand, 7041621 - 7041514
Alignment:
Q  229 ctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttc 328  Q
    |||||||||||||| ||||||  ||| ||||||| ||||| | |||||| ||| |||| | |||||| |||| |||||||||||||||  | | ||||||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 7041522  T
Q  329 gttctctg 336  Q
    ||||||||    
T  7041521 gttctctg 7041514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 7029937 - 7029850
Alignment:
Q  230 tgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    |||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||| |||||| ||| || |||| ||||||||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 7012947 - 7012857
Alignment:
Q  227 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    ||||||| | |||||| |||||| |||| ||||||| ||||| | |||||| ||| |||| | ||||||||||| | ||||||||||||||    
T  7012947 tcctgtaagaattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 9170944 - 9170854
Alignment:
Q  227 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    ||||||| |||||||| |||||| |||| ||||||| ||||| | |||||| ||  | |||| |||||| |||| ||||||||||||||||    
T  9170944 tcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 7046955 - 7046875
Alignment:
Q  238 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggga 318  Q
    ||||| |||||| |||| ||||||| ||||| | |||||| ||| | |||| |||||| ||||| ||||||||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttgggga 7046875  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 9159484 - 9159574
Alignment:
Q  227 tcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttgggg 317  Q
    ||||||| |||||||| |||||| |||| | ||||| ||||| | |||||| ||  | |||| |||||| |||| ||||||||||||||||    
T  9159484 tcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 4439920 - 4439876
Alignment:
Q  294 ggagataaggttttgttcttggggaatggatgttcgttctctgct 338  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||    
T  4439920 ggagatagggttttgtttttggggaatggatgttcgttttctgct 4439876  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 18991256 - 18991220
Alignment:
Q  302 ggttttgttcttggggaatggatgttcgttctctgct 338  Q
    |||||||||||||||||||||||||||||| ||||||    
T  18991256 ggttttgttcttggggaatggatgttcgttttctgct 18991220  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 20694360 - 20694401
Alignment:
Q  297 gataaggttttgttcttggggaatggatgttcgttctctgct 338  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  20694360 gatagggttttgtttttggggaatggatgttcgttttctgct 20694401  T

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