View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3814_low_15 (Length: 309)
Name: NF3814_low_15
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 25822306 - 25822587
Alignment:
| Q |
19 |
ctactagccatgaagacattttcgggtcatcgatacaatcttcgaaagacatgctggtgcatcaaaatgtgaagcaagaactgtgtggctacccttctga |
118 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25822306 |
ctactaaccatgaagacatttttgggtcatcgatacaatcttcgaaagacatgctggtgcatcaaaatgtgaaccaagaactgtgtggctacccttctga |
25822405 |
T |
|
| Q |
119 |
ccttaccaatacaaatgtgattggatcaccagaattcagaggtagtccatttgtgaattcaagatatgatgccttttcgaagcggagccagagctttttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
25822406 |
ccttaccaatacaaatgtgattggatcaccagaattcagaggtagtccatttgtgaattcaagatatgatgccttttcaaatcggagccagagctttttc |
25822505 |
T |
|
| Q |
219 |
gagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgcattagaaccttctactgccttctctg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25822506 |
gagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgcattagaaccttctactgccttctctg |
25822587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 172 - 300
Target Start/End: Original strand, 25816660 - 25816788
Alignment:
| Q |
172 |
tgaattcaagatatgatgccttttcgaagcggagccagagctttttcgagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagt |
271 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||| |||| ||||| |||||||| |||| ||||||||||||| |||||| |||||||||||| |
|
|
| T |
25816660 |
tgaattcaagatatgatgccctttcgaagcagagccagaactttatcgagagcagcagcatggcgagctttaattccatgcttccagatgctacctcagt |
25816759 |
T |
|
| Q |
272 |
tgcattagaaccttctactgccttctctg |
300 |
Q |
| |
|
| |||| || ||||| ||| ||||||||| |
|
|
| T |
25816760 |
tacattggagccttcaacttccttctctg |
25816788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 25813403 - 25813491
Alignment:
| Q |
186 |
gatgccttttcgaagcggagccagagctttttcgagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgc |
274 |
Q |
| |
|
|||||||| || |||| |||||||||||| ||||| ||| ||| |||| ||||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
25813403 |
gatgccttctcaaagcaaagccagagctttatcgagcgcactagcatggcgagctttagttctgatcttccttctgctacctcagttgc |
25813491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 25819073 - 25819113
Alignment:
| Q |
185 |
tgatgccttttcgaagcggagccagagctttttcgagtgca |
225 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
25819073 |
tgatgccttttcgaagcggagccatagctttattgagtgca |
25819113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 33648607 - 33648709
Alignment:
| Q |
185 |
tgatgccttttcgaagcggagccagagctttttcgagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgcattagaacct |
284 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| | |||||||||||| |||| || ||||||||| ||||||||||||||| ||||||||| | |||||| |
|
|
| T |
33648607 |
tgatgccttttcgaagcgtagccaaagctttattgagtgcagcagcatggcgagatttaattccgagcttccttctgctagctcagttgccatggaacct |
33648706 |
T |
|
| Q |
285 |
tct |
287 |
Q |
| |
|
||| |
|
|
| T |
33648707 |
tct |
33648709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 36224621 - 36224517
Alignment:
| Q |
185 |
tgatgccttttcgaagcggagccagagctttttcgagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgcattagaacct |
284 |
Q |
| |
|
|||||||||||| |||||||| || |||||| | ||| |||||| ||| |||||| |||||||| ||||||||||||||| ||||||||| | |||||| |
|
|
| T |
36224621 |
tgatgccttttcaaagcggagacaaagctttattgagcgcagcaacgttgcaagccttaattccgagcttccttctgctagctcagttgccatggaacct |
36224522 |
T |
|
| Q |
285 |
tctac |
289 |
Q |
| |
|
||||| |
|
|
| T |
36224521 |
tctac |
36224517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University