View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3814_low_2 (Length: 647)

Name: NF3814_low_2
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3814_low_2
NF3814_low_2
[»] chr7 (1 HSPs)
chr7 (1-630)||(47053706-47054335)


Alignment Details
Target: chr7 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Original strand, 47053706 - 47054335
Alignment:
Q  1 acacacgagccaagctggaagagcacacactcttctctaagaagaaactaaaccctaatagagcttagggaacttagacgacgctgagttatgaaattct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47053706 acacacgagccaagctggaagagcacacactcttctctaagaagaaactaaaccctaacagagcttagggaacttagacgacgctgagttatgaaattct 47053805  T
Q  101 aagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaacattggcagcttcatcagtctacaaaatgcttgtggcagcgctagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053806 aagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaacattggcagcttcatcagtctacaaaatgcttgtggcagcgctagct 47053905  T
Q  201 gacatgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttgtccaaggtagaggcatcatagtaaagttcctaaatagtttatttct 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47053906 gacacgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttgtccaaggtagaggcatcatagtaaagttcctaaatagattatttct 47054005  T
Q  301 actttatagggacatagtcatggcacatgatcaacactaaaaattttaaccttgaagcattggaaagtaattaggagggaatggttttcatctgggtgag 400  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47054006 actttatagggacatagtcatggcacatgatcaacactaaaatttttaaccttgaagcattggaaagtaattaggagggaatggttttcatctgggtgag 47054105  T
Q  401 aatgtagagaagaaaggggacgaaggtgatagaagtagaattatttacatctgataccaaatgaaatattaaagcaaaacattcttactctcaaccatga 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47054106 aatgtagagaagaaaggggacgaaggtgatagaagtagaattatttacatctgataccaaatgaaatattaaagcaaaacattcttactctcaaccatga 47054205  T
Q  501 atcgtatatcaacttgaaactaaagaacctaaatgcaaactaacacagaataaaagtaacataattaactactttcaaaggagattaacacttctgttta 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47054206 atcgtatatcaacttgaaactaaagaacctaaatgcaaactaacacagaataaaagtaacataattaactactttcaaaggagattaacacttctgttta 47054305  T
Q  601 tagttgattttgaataaaaaatgcaaatat 630  Q
    ||||||||||||||||||||||||||||||    
T  47054306 tagttgattttgaataaaaaatgcaaatat 47054335  T

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