View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3814_low_23 (Length: 249)
Name: NF3814_low_23
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 7097295 - 7097071
Alignment:
| Q |
18 |
agatgctgcagccaagattcaatcgccgaaattttnnnnnnnnntcttgtttgcttgcgagtgcttagtagaactagtaaaaatttattgatttagtaga |
117 |
Q |
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| T |
7097295 |
agatgctgcagccaagattcaatcgccgaaatttaaaaaaaaaatcttgtttgcttgtgagtgcttagtagaactagtaaaaatttattgatttagtaga |
7097196 |
T |
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| Q |
118 |
acaacaaaattttcaaaacaaagtagagagatagcttttcacaaccactaggagttgttgggtcacgaagggagcccgataatgattatgttagattaag |
217 |
Q |
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| T |
7097195 |
acaacaaaattttcaaaacaaagtagagagatagcttttcacaaccactaggagttgttgggtcacgaagggagcccgataatgattatgttagattaag |
7097096 |
T |
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| Q |
218 |
cttgacttttcttacagttcatctc |
242 |
Q |
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| T |
7097095 |
cttgacttttcttacagttcttctc |
7097071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 7583944 - 7584008
Alignment:
| Q |
82 |
ttagtagaactagtaaaaatttattgatttagtagaacaacaaaattttcaaaacaaagtagaga |
146 |
Q |
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| T |
7583944 |
ttagtagaattagtaaaaacatattggtttactataacatttaaattttcaaaacaaagtagaga |
7584008 |
T |
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