View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3814_low_26 (Length: 240)
Name: NF3814_low_26
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 6466364 - 6466181
Alignment:
| Q |
1 |
ttttcaatcaattattgaaatatttgttttatgatgatgttagggttaagctgcaatttggataccacaaaagagatgatatatatttcaggcaagatag |
100 |
Q |
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| T |
6466364 |
ttttcaatcatttgttgaaatatgtgttttatgattatgttagggttaagctgcaattttgatacaacaaaagagattatatatatttcaggcaaggtag |
6466265 |
T |
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| Q |
101 |
attcacaaaaatttctgaggatgatagcccaaaatgaaaagacagtggagatttgctggataacagtgtggagcagtatagcag |
184 |
Q |
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| T |
6466264 |
attcacaaaaatttctgaggatgatagcccaaaatgaaaagacagtggaggtttgctggataacagtgtggagcaatacagcag |
6466181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 43678224 - 43678120
Alignment:
| Q |
1 |
ttttcaatcaattattgaaatatttgttttatgatgatgttagggttaagctgcaatttggataccacaaaagagatgatatatatttcaggcaagatag |
100 |
Q |
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|||||||| || ||||||||||| ||||||||| |||| |||| ||||||| ||| || ||||| | ||| ||||||||||||||||||||| | | |
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| T |
43678224 |
ttttcaataaaatattgaaatatatgttttatgttgataataggtttaagctacaacttcgatacaaaggaaggaatgatatatatttcaggcaaggtgg |
43678125 |
T |
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| Q |
101 |
attca |
105 |
Q |
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||||| |
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| T |
43678124 |
attca |
43678120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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