View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3814_low_27 (Length: 240)
Name: NF3814_low_27
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_27 |
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| [»] scaffold1207 (1 HSPs) |
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| [»] scaffold0734 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 11171240 - 11171146
Alignment:
| Q |
128 |
caaatccacatagaatgattaattcataaagcgatccaannnnnnnncatagtgtacacaactctcttttgttttgtagatgcaaagaggctaat |
222 |
Q |
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| T |
11171240 |
caaatccacatagaatgattaattcataaagcgatccaattgtttttcatagtgtacacaactctcttttgttttgtagatgcaaagaggctaat |
11171146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11171369 - 11171312
Alignment:
| Q |
1 |
ttgttattgttttttacaagggaccaaaatcccaagattgtattacttacggggttaa |
58 |
Q |
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| T |
11171369 |
ttgttattgttttttataagggaccaaaatcccaagattgtattacttacggggttaa |
11171312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 11210012 - 11209968
Alignment:
| Q |
178 |
agtgtacacaactctcttttgttttgtagatgcaaagaggctaat |
222 |
Q |
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| T |
11210012 |
agtgtacacaactctcttttgttttgtagatgcaaagaggctaat |
11209968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 11276562 - 11276530
Alignment:
| Q |
190 |
tctcttttgttttgtagatgcaaagaggctaat |
222 |
Q |
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| T |
11276562 |
tctcttttgttttgtagatgcaaagaggctaat |
11276530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 11156895 - 11156846
Alignment:
| Q |
175 |
catagtgtacacaactctctt--ttgttttgtagatgcaaagaggctaat |
222 |
Q |
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| T |
11156895 |
catagtgtactcaactcttttgtttgttttgtagatgcaaagaggctaat |
11156846 |
T |
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Target: scaffold1207 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 1538 - 1443
Alignment:
| Q |
129 |
aaatccacatagaatgattaattcataaagcgatccaannnnnnnn--catagtgtacacaactctcttttgttttgtagatgcaaagaggctaat |
222 |
Q |
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| T |
1538 |
aaatccacataaaatgattaatacataaagcgatacaattgtttttttcatagtgtacacaactctcttttgttttgtagatgcaaagaggctaat |
1443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1956 - 1908
Alignment:
| Q |
1 |
ttgttattgttttttacaagggaccaaaatcccaagattgtattactta |
49 |
Q |
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| T |
1956 |
ttgttattgttttttataggggaccaaaatctcaagattgtgttactta |
1908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 6770 - 6724
Alignment:
| Q |
178 |
agtgtacacaactct-ct-tttgttttgtagatgcaaagaggctaat |
222 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
6770 |
agtgtacacaactcttctgtttgttttgtagatgcaaagaggctaat |
6724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2407398 - 2407345
Alignment:
| Q |
1 |
ttgttattgttttttacaagggaccaaaatcccaagattgtattacttacgggg |
54 |
Q |
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| T |
2407398 |
ttgttattgttttttataggggaccaaaatcgcaagattgtgatacttaggggg |
2407345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7875756 - 7875716
Alignment:
| Q |
1 |
ttgttattgttttttacaagggaccaaaatcccaagattgt |
41 |
Q |
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|||||||||||||||| | |||||||||||| ||||||||| |
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| T |
7875756 |
ttgttattgttttttataggggaccaaaatcgcaagattgt |
7875716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41415712 - 41415672
Alignment:
| Q |
1 |
ttgttattgttttttacaagggaccaaaatcccaagattgt |
41 |
Q |
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|||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
41415712 |
ttgttattgttttttataaggggccaaaatcgcaagattgt |
41415672 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5003567 - 5003527
Alignment:
| Q |
1 |
ttgttattgttttttacaagggaccaaaatcccaagattgt |
41 |
Q |
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|||||||||||||||| |||||| ||||||| ||||||||| |
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| T |
5003567 |
ttgttattgttttttataagggatcaaaatcgcaagattgt |
5003527 |
T |
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