View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3814_low_3 (Length: 590)
Name: NF3814_low_3
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 31 - 574
Target Start/End: Original strand, 50263459 - 50264002
Alignment:
| Q |
31 |
gatatttaaacattaatcaagatcaaataaaaactgagaatcaaaacccatgaatgatttgacacaatccatcatttgaacaactcttatcttagagacc |
130 |
Q |
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| T |
50263459 |
gatatttaaacattaatcaagatcaaataaaaactgagaatcaaaacccatgaatgatttgacacaatccatcatttgaacaactcttatcttagagacc |
50263558 |
T |
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| Q |
131 |
tgagatttacttagaatctggaaagcatggccaacacctttaaacacttcacattcaacccttgtacctgttcttcccaaagcatcacaaaactccatgt |
230 |
Q |
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| T |
50263559 |
tgagatttacttagaatctggaaagcatggccaacacctttaaaaacttcacattcaacccttgtacctgttcttcccaaagcatcacaaaactccatgt |
50263658 |
T |
|
| Q |
231 |
tcctatccttcaatatatccatctcagatatacacaccaacataggcatcatcagtagcttcaattcctccattttcaccaatggattacaccatggatg |
330 |
Q |
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| T |
50263659 |
tcctatccttcaatatatccatctcagatatacacaccaacataggcatcatcagtagcttcaattcctccattttcaccaatggattacaccatggatg |
50263758 |
T |
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| Q |
331 |
atcgcgatcttcgccatatggtaatgccaatcgccaataagtatctgaagctgctaaattcaaagcagaaccagataattgttccatgcatttctctgat |
430 |
Q |
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| T |
50263759 |
atcgcgatcttcgccatatggtaatgccaatcgccaataagtatctgaagctgctaaattcaaagcagaaccagataattgttccatgcatttctctgat |
50263858 |
T |
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| Q |
431 |
aatgttctttcttttccaccaaaaaatggttgtaccaaaataagaccctttaaatttaaaggccttaaaaatgcaccttcacatgaacctacccttttgg |
530 |
Q |
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| T |
50263859 |
aatgttctttcttttccaccaaaaaatggttgtaccaaaataagaccctttaaatttaaaggccttaaaaatgcaccttcacatgaacctacccttttgg |
50263958 |
T |
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| Q |
531 |
caacattataagctatgttaccacctgcactatcacctcctaag |
574 |
Q |
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| T |
50263959 |
caacattataagctatgttaccacctgcactatcacctcctaag |
50264002 |
T |
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