View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3814_low_4 (Length: 466)
Name: NF3814_low_4
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 21 - 458
Target Start/End: Original strand, 43269179 - 43269625
Alignment:
| Q |
21 |
gtcctaacaaaaggaacggtacaattacatgcaatgctgtctcaactctaaaaccttgaacgtgttacctttctccatattcagtacaaccgaaatcact |
120 |
Q |
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| T |
43269179 |
gtcctaacaaaaggaacggtacaattacatgcaatgctgtctcaactctaaaaccttgaacgtgttacctttctccatattcagtacaaccgaaatcact |
43269278 |
T |
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| Q |
121 |
tccacatgcaacacataacagagaaatctgataagaccatgttacgatataaaaatcaagaacatatattctattatataaaaa---------tagaact |
211 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43269279 |
tccatatgcaacacataacagagaaatctgataagaccatgttacgatataaaaatcaagaacatatattctattatataaaaaaaataaatatagaact |
43269378 |
T |
|
| Q |
212 |
tacagagtgtacgtagttgtataaattttaagaggaggaaatattaatttgagctccacgtcctgcacttaaacgaggttttggtggccttttgaaagct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43269379 |
tacagagtgtacgtagttgtataaattttaagaggaggaaatattaatttgagctccacgtcctgcacttaaacgaggttttggtggccttttgaaagct |
43269478 |
T |
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| Q |
312 |
cgtgatattatggatgatgttacttcaccatcattctcaatggtacgatattgaattttttcagctgttggatcaagaccaaggcatttggagaaagctt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43269479 |
cgtgatattatggatgatgttacttcaccatcattctcaatggtacgatattgaattttttcagctgttggatcaagaccaaggcatttggagaaagctt |
43269578 |
T |
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| Q |
412 |
tcactacttgttcaatgaaatggcatgctgaatctctttctctctgc |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43269579 |
tcactacttgttcaatgaaatggcatgctgaatctctttctctctgc |
43269625 |
T |
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