View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3814_low_5 (Length: 425)
Name: NF3814_low_5
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 3386547 - 3386959
Alignment:
| Q |
1 |
tctttatatgacacatctttatatagcacatctctatatcaacaaatctttaaagcacacttc---aaatagcacattaatacacatcactaaatcatat |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3386547 |
tctttatatgacacatctttatatagcacatctctatatcaacaaatctttaaagcacacttcttcaaatagcacattaatacacatcactaaatcatat |
3386646 |
T |
|
| Q |
98 |
gagattaaaatcaggaaaataaatatattaaactaatacacatgaaacataatagatacaaaataacaatttgaagggattgacacgacatagtgttaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
3386647 |
gagattaaaatcaggaaaataaatatattaaactaatacacatgaaacataatagatacaaaatagcaatttgaagggattgacacgacatagtgttaaa |
3386746 |
T |
|
| Q |
198 |
tttctagaatggaaattcaatcaaaattgcagtttaattatactaatcaattagcaataagaattcaatcatataatggtcaatgtacaaatataaccac |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3386747 |
tttctagaatggaaattcaatcaaaattgcagtttaattatactaatcaattagcaataagaattcaatcatataatggtcaatgtacaaatataaccac |
3386846 |
T |
|
| Q |
298 |
agcagaaagttttgttctttgcaaagccaaaataaactaactaaattcaacataaagtttaagtatcacgtataacatactaaaacaaaatataaattaa |
397 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3386847 |
agcagaaagttttgttctttgcaaagccaaaataaactaactaaattcaacataaagtttaagtatcacgtataacatactaaaacaaaatataaattaa |
3386946 |
T |
|
| Q |
398 |
tgtaattgataaa |
410 |
Q |
| |
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| ||||||||||| |
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|
| T |
3386947 |
tataattgataaa |
3386959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 3851965 - 3851554
Alignment:
| Q |
1 |
tctttatatgacacatctttatatagcacatctctatatcaacaaatctttaaagcacacttc---aaatagcacattaatacacatcactaaatcatat |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
3851965 |
tctttatatgacacatctttatatagcacatctctatatca-caaatctttaaagcacacttcttcaaatagcacattaatacacatcactaaatcatat |
3851867 |
T |
|
| Q |
98 |
gagattaaaatcaggaaaataaatatattaaactaatacacatgaaacataatagatacaaaataacaatttgaagggattgacacgacatagtgttaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
3851866 |
gagattaaaatcaggaaaataaatatattaaactaatacacatgaaacataatagatacaaaatagcaatttgaagggattgacacgacatagtgttaaa |
3851767 |
T |
|
| Q |
198 |
tttctagaatggaaattcaatcaaaattgcagtttaattatactaatcaattagcaataagaattcaatcatataatggtcaatgtacaaatataaccac |
297 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
3851766 |
tttctagaatggaaattcaatcaaaattgcagtttaattatactaatcaattagcaataagaatacaatcatataatggtcaatgtacaaatataaccac |
3851667 |
T |
|
| Q |
298 |
agcagaaagttttgttctttgcaaagccaaaataaactaactaaattcaacataaagtttaagtatcacgtataacatactaaaacaaaatataaattaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3851666 |
agcagaaagttttgttctttgcaaagccaaaataaactaactaatttcaacagaaagtttaagtatcacgtataacatactaaaacaaaatataaattaa |
3851567 |
T |
|
| Q |
398 |
tgtaattgataaa |
410 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
3851566 |
tataattgataaa |
3851554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 14927364 - 14927301
Alignment:
| Q |
230 |
tttaattatactaatcaattagcaataagaattcaatcatataatggtcaatgtacaaatataa |
293 |
Q |
| |
|
|||||||||| |||||||||| |||||| |||||||||||||||| | ||||||||||||||| |
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|
| T |
14927364 |
tttaattatattaatcaattaacaataacaattcaatcatataatattgaatgtacaaatataa |
14927301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29496954 - 29496902
Alignment:
| Q |
1 |
tctttatatgacacatctttatatagcacatctctatatcaacaaatctttaaa |
54 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||| |
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|
| T |
29496954 |
tctttatatgacacatctttatataacacatctctaaatc-acacatctttaaa |
29496902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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