View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3814_low_6 (Length: 420)
Name: NF3814_low_6
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 23 - 410
Target Start/End: Original strand, 20702207 - 20702594
Alignment:
| Q |
23 |
cagggtgcaaaaaatcaacccacccaatacctataaacaacgaattgaggctgccatataccaaactggcagcacaccagaaatcaaacaacggcaaact |
122 |
Q |
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| T |
20702207 |
cagggcgcaaaaaaccaacccacccaagacctataaacaaggaattgaggttgccatataccaaactggcagcacaccataaaacaaacagcggcaaact |
20702306 |
T |
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| Q |
123 |
tggcataccccagcctcaaccacctatgcacaaaaacaacctcacaaccgaatgagacactctttcggattccaataccattcgtaataccactgagaat |
222 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
20702307 |
tggcataccccagcctcaaccacctacacgcaaaaacaacctcacaaccgaatgagacactctttcagattccaataccattcgtaatacaactgagaat |
20702406 |
T |
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| Q |
223 |
ctaccattatcttccaacccccaccaccaaacatcatcctcttgggtccgagcatatccttccaaatcctccaacaactcccgtaacaacttcttctctc |
322 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20702407 |
ctaccattatcttccaacccccaccactaaacatcatcttcttgagtccgagtatatccttccaaatcctccaacaactcccgtaacaacttctcctctc |
20702506 |
T |
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| Q |
323 |
acacnnnnnnnggacgcctccaagtcaacaaccaatgacttcccggaatattaaacacacccaagtcaccaacatttgcttccctttg |
410 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
20702507 |
acacaaacaaaggacgcctccaagtgaacaaccaatgacttcccggaatattaaacacacccaagtcaccaacattttcttccttttg |
20702594 |
T |
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