View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3814_low_8 (Length: 362)
Name: NF3814_low_8
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 37162576 - 37162236
Alignment:
| Q |
18 |
gatcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162576 |
gatcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacat |
37162477 |
T |
|
| Q |
118 |
tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162476 |
tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccac |
37162377 |
T |
|
| Q |
218 |
cagaaacagaggcaacatgttttgcatcaaccacagctccataatagttggacaaaagaaggccgaactgcaacagaacaaagattgctccaactaactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37162376 |
cagaaacagaggcaacatgttttgcatcaaccacagctccataatagttggacaaaagaaagccgaactgcaacagaacaaagattgctccaactaactt |
37162277 |
T |
|
| Q |
318 |
gagaatacatacatcactagtcatgatcttcatctctgctc |
358 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37162276 |
gagaatacatacatcactagtcatgatcttcatctttgctc |
37162236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 37129836 - 37129533
Alignment:
| Q |
18 |
gatcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacat |
117 |
Q |
| |
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||||||||||| ||||||| || |||| |||||||||| |||| |||||||||| |||||||||||||||||||| | | ||| ||||||||| || |
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| T |
37129836 |
gatcttgcctctaaaaggaataacctgatcgccgtttagatcaagcatttcaacatgaccagtttgattgctacaacctattccttcccatgcacagcaa |
37129737 |
T |
|
| Q |
118 |
---tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaac |
214 |
Q |
| |
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||||| ||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
37129736 |
ccatcacttttactgtcccaagattgcaaaaggttagagtcatccaacacaaagcttgccttcaactcaaggagagcatgtctctccttctgtatgcaa- |
37129638 |
T |
|
| Q |
215 |
caccagaaacagaggcaacatgtttt---gcatcaaccacagctccataatagttggacaaaagaaggccgaactgcaacagaacaaagattgctccaac |
311 |
Q |
| |
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|||||||||||| ||| || | ||| ||||| | |||||||| ||||||||| |||||||||||| ||||||||||| |||||| |
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| T |
37129637 |
--------------gcaacatgttttgccgcaacagctacaactccagagtagttggagaaaagaaggtcgaactgcaacacaacaaagattgttccaac |
37129552 |
T |
|
| Q |
312 |
taacttgagaatacataca |
330 |
Q |
| |
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|||||||| | |||||||| |
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|
| T |
37129551 |
taacttgatagtacataca |
37129533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 37136985 - 37136791
Alignment:
| Q |
25 |
cctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgc---acaacattcac |
121 |
Q |
| |
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||||||||||||||||||||| || ||||||| |||| |||||||||||||||||||||||||||| || | ||| |||||| |||||| |||| |
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| T |
37136985 |
cctcgaaaaggaccaaactgatcgccatttagatcaagcatttcaacatggccagtttgattgctacatgtgattccttcccatgcacaacaacaatcac |
37136886 |
T |
|
| Q |
122 |
tcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaacca |
216 |
Q |
| |
|
||||||| ||||| |||| |||||||| || ||| || | |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
37136885 |
tcttactatcccaggtaggcaaaaggtaagtatcttcgacgacaaggcttgccttcaactcaaggagagcatgtctctccttctctatgcaacca |
37136791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 37144134 - 37143830
Alignment:
| Q |
18 |
gatcttgcctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacat |
117 |
Q |
| |
|
||||||| ||| |||||||||||||| | |||||||||| ||| |||||||||| |||||||||||||| || || | ||| |||||||||||| |
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|
| T |
37144134 |
gatcttgtctctaaaaggaccaaactaatcgccgtttagatcaagaatttcaacatgaccagtttgattgctgcacgtgattccttcccatgcacaacaa |
37144035 |
T |
|
| Q |
118 |
---tcactcttactgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaac |
214 |
Q |
| |
|
||| |||||||||||||||||| |||||| || | || ||||| | ||| |||||| ||||||||||||||||||||| |||||| | |||| |
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| T |
37144034 |
ccatcaatcttactgtcccaagtaggcaaaagagaagtgttatataacaccatgctttccttcagctcaaggagagcatgtctctcattctctttgcaac |
37143935 |
T |
|
| Q |
215 |
caccagaaacagaggcaacatgttttgcatcaaccacagctccataatagttggacaaaagaaggccgaactgcaacagaacaaagattgctccaactaa |
314 |
Q |
| |
|
|||||||||| || | ||||| ||||||| || | ||||||||| ||||||||||||| |||| | || ||||||| || |||||||||||||||||| |
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|
| T |
37143934 |
caccagaaacggaagaaacattttttgcagcagctacagctccagaatagttggacaagagaatcgcaaattgcaacacaataaagattgctccaactaa |
37143835 |
T |
|
| Q |
315 |
cttga |
319 |
Q |
| |
|
||||| |
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|
| T |
37143834 |
cttga |
37143830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 38745606 - 38745408
Alignment:
| Q |
30 |
aaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacattca---ctctta |
126 |
Q |
| |
|
|||||||||||||||| || ||||||| ||| |||||||||||||||||||||| |||||||| | | ||| |||||||||||| ||| |||||| |
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| T |
38745606 |
aaaaggaccaaactgatcactatttagatcaagtatttcaacatggccagtttgattcctacaaccaattccttcccatgcacaacaatcatcactctta |
38745507 |
T |
|
| Q |
127 |
ctgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaaca |
225 |
Q |
| |
|
||||||||| || ||||||| || |||||||||||||| | | |||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
38745506 |
gtgtcccaagaaggtaaaaggtaagtgtcatccaacacaagacctgacttcaactcaaggagagcatgtctctccttctctatgcaactaccagaaaca |
38745408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 25 - 317
Target Start/End: Original strand, 35144858 - 35145142
Alignment:
| Q |
25 |
cctcgaaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacattcactct |
124 |
Q |
| |
|
||||||||||||||||||||| || |||| || |||| |||||||||||||||||||||||||||| |||| |||||||| ||||||| || |||| |
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|
| T |
35144858 |
cctcgaaaaggaccaaactgatcgccatttacatcaagcacttcaacatggccagtttgattgctacaaacgacccctttccattcacaacaatctctct |
35144957 |
T |
|
| Q |
125 |
tactgtcccaagtagacaaaaggttagca----tcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccaccag |
220 |
Q |
| |
|
|||| ||||| | |||||| |||| || | || ||| |||||||| |||||||||| |||||| ||||||||||||||||||| ||||| |
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| T |
35144958 |
tactctcccacgaagacaataggtaagtaagtgtcttccgccacaaggccagccttcaactgtaggagaccatgtctctccttctctatgcaacc----t |
35145053 |
T |
|
| Q |
221 |
aaacagaggcaacatgttttgcatcaaccacagctccataatagttggacaaaagaaggccgaactgcaacagaacaaagattgctccaactaactt |
317 |
Q |
| |
|
|||| |||||||||||| |||| ||| ||||| ||||||||||||||||||| | |||||||||| ||| |||||| |||||||||||| |
|
|
| T |
35145054 |
aaac-----caacatgttttg---caactacaactccacaatagttggacaaaagaagctctaactgcaacaatacatagattgttccaactaactt |
35145142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 38745398 - 38745356
Alignment:
| Q |
288 |
caacagaacaaagattgctccaactaacttgagaatacataca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
38745398 |
caacagaacaaagattgctccaactaactttagaagacataca |
38745356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 3025210 - 3025418
Alignment:
| Q |
30 |
aaaaggaccaaactgaaaaccgtttagatgaagcttttcaacatggccagtttgattgctacaaccgacttctttccatgcacaacattca---ctctta |
126 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||| |||||||||||||||||| |||||||||||| | | ||| |||||||||||| ||| |||||| |
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|
| T |
3025210 |
aaaaggaccaaactgatcaccatttagatcaagtatttcaacatggccagtttcattgctacaaccaattccttcccatgcacaacaatcatcactctta |
3025309 |
T |
|
| Q |
127 |
ctgtcccaagtagacaaaaggttagcatcatccaacacaaggctggccttcaactcaaggagagcatgtctctccttctctatacaaccaccagaaacag |
226 |
Q |
| |
|
|||||||||| || ||||||| || | |||||||||||| | | ||||||||||||||| || ||||||||||||||||| |||| ||||||||||| |
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|
| T |
3025310 |
ctgtcccaagaaggtaaaaggtaagtgttatccaacacaagacctgacttcaactcaaggagtgcttgtctctccttctctatgcaactaccagaaacag |
3025409 |
T |
|
| Q |
227 |
aggcaacat |
235 |
Q |
| |
|
| ||||||| |
|
|
| T |
3025410 |
aagcaacat |
3025418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 317
Target Start/End: Original strand, 29723986 - 29724074
Alignment:
| Q |
229 |
gcaacatgttttgcatcaaccacagctccataatagttggacaaaagaaggccgaactgcaacagaacaaagattgctccaactaactt |
317 |
Q |
| |
|
||||||||||| |||| | | | ||||||| || ||||||| || |||| | ||| |||||| |||||||||||||||||||||||| |
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|
| T |
29723986 |
gcaacatgtttggcataagctatagctccacaacagttggataagagaatctccaacagcaacacaacaaagattgctccaactaactt |
29724074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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