View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3814_low_9 (Length: 360)
Name: NF3814_low_9
Description: NF3814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3814_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 43255951 - 43255623
Alignment:
| Q |
17 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
116 |
Q |
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| T |
43255951 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
43255852 |
T |
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| Q |
117 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
43255851 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaaggttagcaatgtt |
43255752 |
T |
|
| Q |
217 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
316 |
Q |
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| T |
43255751 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
43255652 |
T |
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| Q |
317 |
accagtctcaagttccactaaatgaatgt |
345 |
Q |
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| T |
43255651 |
accagtctcaagttccactaaatgaatgt |
43255623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 43259217 - 43258889
Alignment:
| Q |
17 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
116 |
Q |
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| T |
43259217 |
cacagaagattccaagattggtacaatcctggctccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
43259118 |
T |
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| Q |
117 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgtt |
216 |
Q |
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| T |
43259117 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaggaattaaagctgaaggaagttaagaatggaaggttagcaatgtt |
43259018 |
T |
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| Q |
217 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
316 |
Q |
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| T |
43259017 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
43258918 |
T |
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| Q |
317 |
accagtctcaagttccactaaatgaatgt |
345 |
Q |
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| T |
43258917 |
accagtctcaagttccactaaatgaatgt |
43258889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 53 - 345
Target Start/End: Complemental strand, 43247918 - 43247626
Alignment:
| Q |
53 |
atgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
152 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43247918 |
atgggaaaacaatactttttaggacttgagaaaggtcttggcggttccggtgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
43247819 |
T |
|
| Q |
153 |
aagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggttactttattcaagctcttgttac |
252 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
43247818 |
aagatgagaaatcattgaaggatttaaagctgaaggaagttaagaatggaaggttagctatgttggcaatattgggttactttgttcaagctctagttac |
43247719 |
T |
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| Q |
253 |
aggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttgaccagtctcaagttccactaaatgaatgt |
345 |
Q |
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| T |
43247718 |
aagagttggaccataccaaaacttcttaaatcatttggctgacccttcaaacaacaacatcttgaccagtctcaagttccactaaatgaatgt |
43247626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 43234059 - 43233964
Alignment:
| Q |
220 |
aatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatctt |
315 |
Q |
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|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
43234059 |
aatactgggtgactttgttcaatctcttgttacaggagttggaccataccaaaacctcttggatcatttggctgaccctttcaacaacaacatctt |
43233964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 345
Target Start/End: Complemental strand, 43254144 - 43254101
Alignment:
| Q |
302 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgt |
345 |
Q |
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| T |
43254144 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgt |
43254101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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