View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3815_high_1 (Length: 557)

Name: NF3815_high_1
Description: NF3815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3815_high_1
NF3815_high_1
[»] chr3 (5 HSPs)
chr3 (18-114)||(45365845-45365941)
chr3 (144-197)||(45365763-45365816)
chr3 (30-109)||(48989758-48989836)
chr3 (283-320)||(45365640-45365677)
chr3 (323-369)||(45365577-45365623)
[»] chr4 (1 HSPs)
chr4 (30-109)||(36759964-36760042)
[»] chr1 (1 HSPs)
chr1 (324-369)||(38680756-38680801)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 45365941 - 45365845
Alignment:
Q  18 acgtggttcccactttgctccttccaccatcatttaaaagaagaaacccacatgttgctatactgtaaattggatagttatattatggtagggaagg 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  45365941 acgtggttcccactttgctccttccgccatcatttaaaagaagaaacccacatgttgctatactgtaaattggatagtaatatcatgttagggaagg 45365845  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 45365816 - 45365763
Alignment:
Q  144 actggtgaagaggtgggaagcttctagtatgtgtcttagtttgattttaatatg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45365816 actggtgaagaggtgggaagcttctagtatgtgtcttagtttgattttaatatg 45365763  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 48989758 - 48989836
Alignment:
Q  30 ctttgctccttccaccatcatttaaaagaagaaacccacatgttgctatactgtaaattggatagttatattatggtagg 109  Q
    ||||||| | ||||||||||||| ||||||||| | || |||||||||| |||| ||||||||||| |||||||||||||    
T  48989758 ctttgctgcatccaccatcattttaaagaagaagctcatatgttgctat-ctgtgaattggatagtcatattatggtagg 48989836  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 45365677 - 45365640
Alignment:
Q  283 gaactacatacacatattgtttaaaatttgtgatgtac 320  Q
    |||||||| |||||||||||||||||||||||||||||    
T  45365677 gaactacagacacatattgtttaaaatttgtgatgtac 45365640  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 45365623 - 45365577
Alignment:
Q  323 ttaatttgtatgtaaggatattcttgtcatttgcaaaataatattaa 369  Q
    |||| ||||||||| |||||||||||||||||| ||| |||||||||    
T  45365623 ttaacttgtatgtagggatattcttgtcatttgtaaagtaatattaa 45365577  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 36759964 - 36760042
Alignment:
Q  30 ctttgctccttccaccatcatttaaaagaagaaacccacatgttgctatactgtaaattggatagttatattatggtagg 109  Q
    ||||||| | ||||||||||||| ||||||||| | || ||||||||||  ||| ||||||||||| |||||||||||||    
T  36759964 ctttgctgcatccaccatcatttcaaagaagaagctcatatgttgctat-ttgtgaattggatagtcatattatggtagg 36760042  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 38680756 - 38680801
Alignment:
Q  324 taatttgtatgtaaggatattcttgtcatttgcaaaataatattaa 369  Q
    ||||||||||||| |||| || ||||| ||||||||||||||||||    
T  38680756 taatttgtatgtagggatgttattgtcgtttgcaaaataatattaa 38680801  T

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