View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3815_high_10 (Length: 263)
Name: NF3815_high_10
Description: NF3815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3815_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 559239 - 559013
Alignment:
| Q |
22 |
aaaaaagcacatgttcaagtagaattgaccatctcaatcatgaaatgtttgaaagattaattagcagacaagagattctaaataggttagccaaaccaat |
121 |
Q |
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| T |
559239 |
aaaaaagcacatgttcaagtagaattgaccatctcaatcatgaaatgtttgaaagattaattagcagacaagagattttaaataggttagccaaaccaat |
559140 |
T |
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| Q |
122 |
aaataaaccacaaacacctcctaccattttatctcaacaaacttcagtcaagccactgac-------aatttaatcaatttttctaagaatctcttgttt |
214 |
Q |
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| T |
559139 |
aaataaaacacaaacacctcctagcattttatctcaacaaacttcagtcaagccactgacactttaaagtttaatctatttttctaagaatctcttgttt |
559040 |
T |
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| Q |
215 |
taaccaaagagactcttacaaaagaat |
241 |
Q |
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| T |
559039 |
taaccaaagagactcttacaaaagaat |
559013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 533457 - 533409
Alignment:
| Q |
81 |
attagcagacaa-gagattctaaataggttagccaaaccaataaataaa |
128 |
Q |
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|||||||||||| |||||||||||| |||||||| ||||||||| |||| |
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| T |
533457 |
attagcagacaaagagattctaaattggttagcccaaccaataattaaa |
533409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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