View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3815_high_12 (Length: 237)
Name: NF3815_high_12
Description: NF3815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3815_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 558991 - 558801
Alignment:
| Q |
17 |
ttggttttctataa-catttcttcaatgactaatcttattggagacatgtcaaatatttaacatgaatatctctttgtcataatttaaatttttagttcg |
115 |
Q |
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| T |
558991 |
ttggttttctataaacatttcttcaatgactaatcttattggagacatgtcaaatatttaacatgaatatctcttagtcataatttaaatttttagttcg |
558892 |
T |
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| Q |
116 |
tcggattttgaggttttagctcttttgctagacctaactaagttggtgattaaatccaatttttaagaaagaataaaatggaattggctcg |
206 |
Q |
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| T |
558891 |
tcgaattttgagggtttagctcttttgctagacctaactaagttggtgattaaatccaatttttaagaaagaataaaatggaattggctcg |
558801 |
T |
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