View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3815_high_4 (Length: 482)
Name: NF3815_high_4
Description: NF3815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3815_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 461
Target Start/End: Complemental strand, 35280 - 34832
Alignment:
| Q |
7 |
gtttgttggcgatgataattccaacggagctgacaatgttcatcccccatgctccaacattagataaagatgcttttttctttactactacattctccat |
106 |
Q |
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| T |
35280 |
gtttgttagcgatgataattccaacggagctgacaatgttcatcccccatgctccaacattagataaagatgcttttttctttactactacattctccat |
35181 |
T |
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| Q |
107 |
tatatctctctatctataataataataacaacatcaacattaatcaatttgaaggataaccgctcctcctcctcccccttggctagatggatctaagaaa |
206 |
Q |
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| T |
35180 |
tatatctctctatctataataataataacaacaacaacattaatcaatttgaaggataaccgctcctcctcctcccccttggctagatggatctaagaaa |
35081 |
T |
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| Q |
207 |
tagtcgacagcacgcatgcattgtttctctgcaaatgcatccaatccaatcaaatctacctttaattgtttatgtgattgggatcaaaacaaagatttct |
306 |
Q |
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| T |
35080 |
tagtcgacagcacgcatgcattgtttctctgcaaatgcatcc-----aatcaaatctacctttaattgtttatgtgattgggatcaaaacaaagatttct |
34986 |
T |
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| Q |
307 |
tcttttctttttagacaagattattaattagaagnnnnnnnncctgagtaaaggagatgaacaacatttatgcctcttcatctcaccacactcctcttcg |
406 |
Q |
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| T |
34985 |
tcttttctttttagacaagattattaattagaa-aaaaaaaacccgagtaaaggagatgaacaacatttatgcctcttcatctcaccacacttctcttct |
34887 |
T |
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| Q |
407 |
ctnnnnnnngcatattcgctattccttccttcacctcttcacgccaccactctct |
461 |
Q |
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| T |
34886 |
ctcccccccgcatattcgctattccttccttcacctctttacgccaccactctct |
34832 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 8677488 - 8677533
Alignment:
| Q |
18 |
atgataattccaacggagctgacaatgttcatcccccatgctccaa |
63 |
Q |
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| T |
8677488 |
atgataattccaacggaactcacaacgttcataccccatgctccaa |
8677533 |
T |
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