View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3815_low_10 (Length: 269)

Name: NF3815_low_10
Description: NF3815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3815_low_10
NF3815_low_10
[»] scaffold0091 (3 HSPs)
scaffold0091 (8-123)||(29057-29173)
scaffold0091 (186-263)||(28917-28994)
scaffold0091 (201-263)||(24720-24782)
[»] scaffold0218 (2 HSPs)
scaffold0218 (8-122)||(14378-14493)
scaffold0218 (186-263)||(14237-14314)
[»] chr3 (9 HSPs)
chr3 (8-120)||(16642300-16642413)
chr3 (8-121)||(4712799-4712913)
chr3 (8-123)||(14062777-14062893)
chr3 (8-123)||(14055036-14055152)
chr3 (19-119)||(13926858-13926960)
chr3 (199-263)||(16642133-16642197)
chr3 (199-263)||(4712995-4713059)
chr3 (199-263)||(14062981-14063045)
chr3 (200-263)||(14055221-14055284)
[»] chr6 (4 HSPs)
chr6 (8-123)||(14989374-14989490)
chr6 (8-121)||(14980262-14980376)
chr6 (199-263)||(14980458-14980522)
chr6 (86-123)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (8-123)||(51658661-51658777)
chr1 (16-123)||(13882243-13882351)
chr1 (199-263)||(13882462-13882526)
chr1 (202-260)||(51658854-51658912)
chr1 (15-108)||(1567069-1567166)
[»] chr7 (9 HSPs)
chr7 (8-123)||(48376787-48376903)
chr7 (8-123)||(16060512-16060628)
chr7 (186-263)||(16060374-16060449)
chr7 (19-123)||(4531759-4531865)
chr7 (200-263)||(9080206-9080269)
chr7 (211-263)||(16069015-16069067)
chr7 (211-263)||(48376637-48376689)
chr7 (86-123)||(9080338-9080375)
chr7 (91-123)||(37946032-37946064)
[»] chr8 (6 HSPs)
chr8 (8-123)||(23658526-23658650)
chr8 (8-123)||(23657751-23657885)
chr8 (212-263)||(23657648-23657699)
chr8 (212-263)||(23658423-23658474)
chr8 (211-263)||(17862251-17862303)
chr8 (19-54)||(29293929-29293964)
[»] scaffold1269 (1 HSPs)
scaffold1269 (8-100)||(1-94)
[»] scaffold0003 (2 HSPs)
scaffold0003 (49-123)||(130795-130870)
scaffold0003 (199-263)||(130633-130697)
[»] scaffold0319 (1 HSPs)
scaffold0319 (8-77)||(13569-13638)
[»] scaffold0063 (2 HSPs)
scaffold0063 (186-263)||(28443-28518)
scaffold0063 (85-123)||(28342-28380)
[»] chr2 (2 HSPs)
chr2 (19-123)||(23656470-23656576)
chr2 (211-262)||(23907788-23907839)
[»] scaffold0061 (1 HSPs)
scaffold0061 (199-258)||(18097-18156)
[»] scaffold1043 (1 HSPs)
scaffold1043 (211-263)||(1432-1484)
[»] chr5 (3 HSPs)
chr5 (211-263)||(25756788-25756840)
chr5 (211-263)||(25790961-25791013)
chr5 (216-260)||(24832209-24832253)
[»] chr4 (2 HSPs)
chr4 (33-102)||(3576240-3576311)
chr4 (216-263)||(19728457-19728504)


Alignment Details
Target: scaffold0091 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 29173 - 29057
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  29173 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 29074  T
Q  107 atgttagtgatgatgag 123  Q
    |||||||||||||||||    
T  29073 atgttagtgatgatgag 29057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 28994 - 28917
Alignment:
Q  186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 28917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 24782 - 24720
Alignment:
Q  201 atatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 24720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 14493 - 14378
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  14493 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14394  T
Q  107 atgttagtgatgatga 122  Q
    ||||||||||||||||    
T  14393 atgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 14314 - 14237
Alignment:
Q  186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||||||||||  ||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||  |||||| ||||    
T  14314 gggtggtgtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtc 14237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 16642413 - 16642300
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  16642413 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 16642314  T
Q  107 atgttagtgatgat 120  Q
    ||||||||||||||    
T  16642313 atgttagtgatgat 16642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 4712799 - 4712913
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  4712799 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttat 4712898  T
Q  107 atgttagtgatgatg 121  Q
    |||||||||||||||    
T  4712899 atgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 14062777 - 14062893
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  14062777 agagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttat 14062876  T
Q  107 atgttagtgatgatgag 123  Q
    |||||||| ||||||||    
T  14062877 atgttagttatgatgag 14062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 14055036 - 14055152
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||| |  |||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  14055036 agagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttat 14055135  T
Q  107 atgttagtgatgatgag 123  Q
    ||||||||||| |||||    
T  14055136 atgttagtgataatgag 14055152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 13926858 - 13926960
Alignment:
Q  19 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtga 116  Q
    ||||||||| |||||||||| ||||||||||||| |  ||||||||||| || ||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  13926858 atgaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T
Q  117 tga 119  Q
    |||    
T  13926958 tga 13926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 16642197 - 16642133
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16642197 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16642133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 4712995 - 4713059
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  4712995 atatatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtc 4713059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 14062981 - 14063045
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    ||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14062981 atatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 14063045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 14055221 - 14055284
Alignment:
Q  200 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||||| ||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  14055221 tatatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatgatgtc 14055284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 14989374 - 14989490
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  14989374 agagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14989473  T
Q  107 atgttagtgatgatgag 123  Q
    |||||||||||||||||    
T  14989474 atgttagtgatgatgag 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 14980262 - 14980376
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  14980262 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14980361  T
Q  107 atgttagtgatgatg 121  Q
    |||||||||||||||    
T  14980362 atgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 14980458 - 14980522
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14980458 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 14980522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  86 atgagaaatgataatgtttatatgttagtgatgatgag 123  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 51658661 - 51658777
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  51658661 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttat 51658760  T
Q  107 atgttagtgatgatgag 123  Q
    |||||||||||||||||    
T  51658761 atgttagtgatgatgag 51658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 13882243 - 13882351
Alignment:
Q  16 ataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttatatgttagt 114  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  13882243 ataatgaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagt 13882342  T
Q  115 gatgatgag 123  Q
    |||||||||    
T  13882343 gatgatgag 13882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 13882462 - 13882526
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    ||||||| |||  ||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  13882462 atatatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 13882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 51658854 - 51658912
Alignment:
Q  202 tatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgat 260  Q
    |||| ||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatgat 51658912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 1567069 - 1567166
Alignment:
Q  15 aataatgaggaat-acataat-gtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatat 108  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||  ||||||||||| ||||||  || ||||||||||||||||||| ||| |||||||    
T  1567069 aataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 48376903 - 48376787
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  48376903 agagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 48376804  T
Q  107 atgttagtgatgatgag 123  Q
    |||||| ||||||||||    
T  48376803 atgttattgatgatgag 48376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 16060628 - 16060512
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat 106  Q
    ||||||||||||||||||||  ||||||||| || |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  16060628 agagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttat 16060529  T
Q  107 atgttagtgatgatgag 123  Q
    |||||||||||||||||    
T  16060528 atgttagtgatgatgag 16060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 16060449 - 16060374
Alignment:
Q  186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16060449 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16060374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 4531759 - 4531865
Alignment:
Q  19 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacgatgagaaatgataatgtttatatgttagtga 116  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||||| |||| ||| ||||||||| ||||||||| |||||| |||||| ||| |||    
T  4531759 atgaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattga 4531858  T
Q  117 tgatgag 123  Q
    |||||||    
T  4531859 tgatgag 4531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 9080269 - 9080206
Alignment:
Q  200 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  9080269 tatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 9080206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 16069015 - 16069067
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  16069015 tgacgatgagaatgatgacgtataattatgatgatgatttgaatgatgatgtc 16069067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 48376689 - 48376637
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtc 48376637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  86 atgagaaatgataatgtttatatgttagtgatgatgag 123  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 37946032 - 37946064
Alignment:
Q  91 aaatgataatgtttatatgttagtgatgatgag 123  Q
    |||||||||||||||||| ||||||||||||||    
T  37946032 aaatgataatgtttatattttagtgatgatgag 37946064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 23658650 - 23658526
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatataca--------tgtaatt-aataaatacgatgagaaatgata 98  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |        ||||||| ||||||||||||||||||| |||    
T  23658650 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattata 23658551  T
Q  99 atgtttatatgttagtgatgatgag 123  Q
    |||||||||||||||||||||||||    
T  23658550 atgtttatatgttagtgatgatgag 23658526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 23657885 - 23657751
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatatta------------------tatacatgtaatt-aataaatacgatg 88  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||                  |||| |||||||| |||||||||||||    
T  23657885 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatatatatatatatatatgtaattaaataaatacgatg 23657786  T
Q  89 agaaatgataatgtttatatgttagtgatgatgag 123  Q
    |||||| ||||||||||||||||||||||||||||    
T  23657785 agaaattataatgtttatatgttagtgatgatgag 23657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 23657699 - 23657648
Alignment:
Q  212 gactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 23657648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 23658474 - 23658423
Alignment:
Q  212 gactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtc 23658423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 17862251 - 17862303
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||| ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  17862251 tgacgatgagaatgataaggtataattatgatgatgatttgaatgatgatgtc 17862303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 29293964 - 29293929
Alignment:
Q  19 atgaggaatacataatgtgacgaagagtgatgacga 54  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29293964 atgaggaatccataatgtgacgaagagtgatgacga 29293929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 94 - 1
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataat 100  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  94 agagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 130870 - 130795
Alignment:
Q  49 tgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatgag 123  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 130697 - 130633
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  130697 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 13569 - 13638
Alignment:
Q  8 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa 77  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  13569 agagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaa 13638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 28443 - 28518
Alignment:
Q  186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  28443 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtc 28518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  85 gatgagaaatgataatgtttatatgttagtgatgatgag 123  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 23656470 - 23656576
Alignment:
Q  19 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgtaa-ttaataaatacgatgagaaatgataatgtttatatgttagtga 116  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||| ||| || | ||||||||| ||||||||||||||| ||||||| ||| |||    
T  23656470 atgaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatattttaatga 23656569  T
Q  117 tgatgag 123  Q
    | |||||    
T  23656570 taatgag 23656576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 23907839 - 23907788
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgt 262  Q
    |||| |||||||||| |||||||| |||||||||| | ||||||||||||||    
T  23907839 tgacgatgagaatgatgacgtatatttatgatgataatttgaatgatgatgt 23907788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 18097 - 18156
Alignment:
Q  199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatg 258  Q
    ||||||| ||| ||||||||||||||| || |||| ||||||||||||||||||||||||    
T  18097 atatatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatg 18156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 1432 - 1484
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||| ||||||||||  |||||||||||||||||||| |||||||||||||||    
T  1432 tgacgatgagaatgataacgtataattatgatgatgatttgaatgatgatgtc 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 25756788 - 25756840
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25756788 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25756840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 25791013 - 25790961
Alignment:
Q  211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25791013 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 24832209 - 24832253
Alignment:
Q  216 atgagaatgaagacgtataattatgatgatgacttgaatgatgat 260  Q
    |||||||||| || |||||||||||||||||| ||||||||||||    
T  24832209 atgagaatgatgatgtataattatgatgatgatttgaatgatgat 24832253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
Q  33 atgtgacgaagagtgatgacga-agatattatatacatgta-attaataaatacgatgagaaatgataatgt 102  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| || |||||||||||||||| ||||| ||||    
T  3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 19728457 - 19728504
Alignment:
Q  216 atgagaatgaagacgtataattatgatgatgacttgaatgatgatgtc 263  Q
    ||||||||||  | |||||||||||||||||| |||||||||||||||    
T  19728457 atgagaatgataaagtataattatgatgatgatttgaatgatgatgtc 19728504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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