View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3815_low_12 (Length: 245)
Name: NF3815_low_12
Description: NF3815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3815_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 9401273 - 9401035
Alignment:
| Q |
1 |
atgaaggactagagagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatatcccatttatgggttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9401273 |
atgaaggactagagagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatattccatttatgggttg |
9401174 |
T |
|
| Q |
101 |
gattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctaccaagaaattattgatgaacatttggatccaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9401173 |
gattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaagagtttgatgaattctaccaagaaattattgatgaacatttggatccaaat |
9401074 |
T |
|
| Q |
201 |
ggacaacaatttacaagtgaaaaggttattgatgatgtc |
239 |
Q |
| |
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| T |
9401073 |
gaacaacaatttacaagtgaaaaggttattgttgatgtc |
9401035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 20075609 - 20075414
Alignment:
| Q |
13 |
agagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatatcccatttatgggttggattgataaact |
112 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||| | |||||||||||||||||| |
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| T |
20075609 |
agaggagtaaattccagggaatgttgcatgagtttgaggccatgataacagctttctttatttctgattatattccattcacgggttggattgataaact |
20075510 |
T |
|
| Q |
113 |
aagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctaccaagaaattattgatgaacatttggatccaaatggacaaca |
208 |
Q |
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| || | | || ||||| || ||||||| |||||| | ||||| || |||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
20075509 |
atctggacttcgtgcgcgtctcgaacgaaattttaaggagatggatgagttttaccaagaggttattgatgaacatttggatccaaatagacaaca |
20075414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 8930257 - 8930063
Alignment:
| Q |
12 |
gagagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatatcccatttatgggttggattgataaac |
111 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
8930257 |
gagaggagtaaattccatggaatgttgcatgagtttgaggccttgatgacagctttctttgtttctgattatattacattcatgagttggattgataaac |
8930158 |
T |
|
| Q |
112 |
taagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctaccaagaaattattgatgaacatttggatccaaatggacaa |
206 |
Q |
| |
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| || || ||||||||||||||||||||||||||||||||| | |||| ||| |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
8930157 |
ttaggggattgcatggtcgtcttgatagaaatttcaaggagatggatgcattttaccaagaggttattgatgaacatttggatccaaatagacaa |
8930063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 8975921 - 8976088
Alignment:
| Q |
69 |
tttgtttctgattatatcccatttatgggttggattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctacc |
168 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
8975921 |
tttgtttctgattatattccattcatgagttggattgataaacttaggggattgcatggtcgtcttgatagaaatttcaaggagtttgatgaattttatc |
8976020 |
T |
|
| Q |
169 |
aagaaattattgatgaacatttggatccaaatggacaacaatttacaagtgaaaaggttattgatgat |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || ||||| ||||| |||| | ||||||| |||| |
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|
| T |
8976021 |
aagagattattgatgaacatttggatccaaatagagaacaaattacagatgaagaagttattgttgat |
8976088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 8916413 - 8916218
Alignment:
| Q |
13 |
agagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatatcccatttatgggttggattgataaact |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||||||| |
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| T |
8916413 |
agaggagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctctctttatttctgattatattccatttacgggttggattgataaact |
8916314 |
T |
|
| Q |
113 |
aagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctaccaagaaattattgatgaacatttggatccaaatggacaaca |
208 |
Q |
| |
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| || | | || ||||| || ||||||| |||||| | ||||| || ||||| || |||||||||||||||||||||||||| ||||||| |
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| T |
8916313 |
atctggccttcgtgcacgtctcgaacgaaattttaaggagatggatgagttttaccaggaggttattgatgaacatttggatccaaatagacaaca |
8916218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 9027673 - 9027819
Alignment:
| Q |
69 |
tttgtttctgattatatcccatttatgggttggattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctacc |
168 |
Q |
| |
|
||||||||||||||||| || || ||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
9027673 |
tttgtttctgattatattcccttcatgagttggattgataaacttaggggattgcatggtcgtcttgatagaaatttcaaggagtttgatgaattttatc |
9027772 |
T |
|
| Q |
169 |
aagaaattattgatgaacatttggatccaaatggacaacaatttaca |
215 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| || ||||| ||||| |
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| T |
9027773 |
aagagattattgatgtacatttggatccaaatagagaacaaattaca |
9027819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 9002190 - 9002023
Alignment:
| Q |
69 |
tttgtttctgattatatcccatttatgggttggattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctacc |
168 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| || || | |
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|
| T |
9002190 |
tttgtttctgattatattccattcatgagttggattgataaacttaggggattgcatggtcgtcttgatagaaatttcaaggagtttgatgatttttatc |
9002091 |
T |
|
| Q |
169 |
aagaaattattgatgaacatttggatccaaatggacaacaatttacaagtgaaaaggttattgatgatgtc |
239 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| || |||| |||| |||| ||||||||| ||||||| |
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| T |
9002090 |
aagagattatagatgaacatttggatccaaatagaaaaca---tacagatgaagaggttattgttgatgtc |
9002023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 8905569 - 8905374
Alignment:
| Q |
13 |
agagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatatcccatttatgggttggattgataaact |
112 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||||||| |
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| T |
8905569 |
agaggagtaaattccatggaatgttgcgtgagtttgaggccatgttgacagctctctttatttctgattatattccatttacgggttggattgataaact |
8905470 |
T |
|
| Q |
113 |
aagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctaccaagaaattattgatgaacatttggatccaaatggacaaca |
208 |
Q |
| |
|
| || | | || ||||| || ||||||| |||||| | ||||| || ||||| || |||||||||||||||||||||||||| ||||||| |
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|
| T |
8905469 |
atctggccttcgtgcacgtctcgaacgaaattttaaggagatggatgagttttaccaggaggttattgatgaacatttggatccaaatagacaaca |
8905374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 8952831 - 8953002
Alignment:
| Q |
68 |
ctttgtttctgattatatcccatttatgggttggattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctac |
167 |
Q |
| |
|
|||| ||||||||||||| ||||| | ||| ||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||||||| || |
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|
| T |
8952831 |
ctttttttctgattatattccattcacgggatggattgataagctcagaggattgcatggtcgtgttgatagaaatttcaaggagtttgatgaattttat |
8952930 |
T |
|
| Q |
168 |
caagaaattattgatgaacatttggatccaaatggacaacaatttacaagtgaaaaggttattgatgatgtc |
239 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||| ||||| |||| ||| ||||| ||||||| |
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|
| T |
8952931 |
caagagattattgatgaacatttggatccaaatagagaacatattacagatgaagaggatattgttgatgtc |
8953002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 8972128 - 8971988
Alignment:
| Q |
69 |
tttgtttctgattatatcccatttatgggttggattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctacc |
168 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||| ||||||| || ||||| |||||||||||| |||||| |||||||||||||||||||||||| || | |
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|
| T |
8972128 |
tttgtttgtgattatattccatatatgggttggcttgataagcttagaggattgcatggtcgtgttgataaaaatttcaaggagtttgatgaattttatc |
8972029 |
T |
|
| Q |
169 |
aagaaattattgatgaacatttggatccaaatggacaacaa |
209 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
8972028 |
aagagattattgatgagcatttggatccaaatagagaacaa |
8971988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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