View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3815_low_3 (Length: 517)
Name: NF3815_low_3
Description: NF3815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3815_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 12954190 - 12954476
Alignment:
| Q |
18 |
cctctttcacactttccaccaaagatcctcttggacttttttcatacccttttcctaattaagtcttactctctctaaagcttcaatttttacacaaaac |
117 |
Q |
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| T |
12954190 |
cctctttcacactttccaccaaagatcctcttggacttttttcatacccttttcctaattaagtcttactctctttaaagcttcaatttttacacaaaac |
12954289 |
T |
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| Q |
118 |
cccnnnnnnngggactttttctttccatttactcgttcaaatttctatatttttgaccaattgggtcaatttcgacctgatccagttataatcgtgttga |
217 |
Q |
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| T |
12954290 |
ccctttttttgggactttttctttccatttacccgttcaaatttctatatttttgaccaattgggtcaatttcgacctgatccagttataatcgtgttga |
12954389 |
T |
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| Q |
218 |
attgtctgaaactgatttcaattttgtgtgaagtttggaaataaagaagggtatgttttctacctcttatataggttttagggttaa |
304 |
Q |
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| T |
12954390 |
attgtctgaaactgatttcaattttgtgtgaagtttggaaataaagaagggtatgttttctacctcttatataggttttagggttaa |
12954476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 373 - 502
Target Start/End: Original strand, 12954545 - 12954674
Alignment:
| Q |
373 |
acatttaaatccggaattttggatattgatttctggtttgacttaagggatgcttagattattggttttttgaggtagctagtgtgttagaatatatttt |
472 |
Q |
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| T |
12954545 |
acatttaaatctggaattttggatattgatttctggtttgacttaagggatgcttagattattggttttttgaggtagctagtgtgttagaatatatttt |
12954644 |
T |
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| Q |
473 |
gaagtttaatgggttgttgtttagcttgat |
502 |
Q |
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| T |
12954645 |
gaagtttaatgggttgttgtttagcttgat |
12954674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 12940240 - 12940270
Alignment:
| Q |
18 |
cctctttcacactttccaccaaagatcctct |
48 |
Q |
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| T |
12940240 |
cctctttcacactttccaccaaagatcctct |
12940270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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