View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3815_low_6 (Length: 355)

Name: NF3815_low_6
Description: NF3815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3815_low_6
NF3815_low_6
[»] chr2 (5 HSPs)
chr2 (9-341)||(40329898-40330229)
chr2 (19-341)||(35133326-35133648)
chr2 (9-341)||(19267134-19267466)
chr2 (9-341)||(3777146-3777477)
chr2 (9-159)||(41985355-41985505)
[»] chr7 (2 HSPs)
chr7 (9-341)||(22902084-22902422)
chr7 (54-155)||(49011660-49011761)
[»] scaffold0036 (1 HSPs)
scaffold0036 (9-314)||(79404-79709)
[»] chr3 (1 HSPs)
chr3 (51-158)||(47395732-47395839)
[»] chr8 (2 HSPs)
chr8 (142-277)||(14761706-14761841)
chr8 (217-277)||(26975243-26975303)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 341
Target Start/End: Complemental strand, 40330229 - 40329898
Alignment:
Q  9 agcataggcgtggtaagtggaggcgtgcacagtgaggagctgaatggagatcatggagtctgagtaacaaaccatttcgtcaatacctaaatcaatggcc 108  Q
    ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||     
T  40330229 agcataggcatggtaagtggaggcgtgcac-gtaaggagctgaatggagatcatggagtccgagtaacaaaccatttcgttaatacctaaatcaatggct 40330131  T
Q  109 agcagaataccacggtgtattgctgtaagctcggcaaacaaaatgtcagaacttgttgtaatatagccagagaaacctttaagaaataaacctgcataat 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40330130 agcagaataccacggtgtattgctgtaagctcggcaaacaatatgtcagaacttgttgtaatatagccagagaaacctttaagaaataaacctgcataat 40330031  T
Q  209 ttcttatgattccaccaaaacccgctctagtaggagttcccaagcagctgccgtcaacattgagcacaaaactgttaaaattgttttcattccagcgaac 308  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40330030 ttcttatgattccaccaaaacccgctctaataggagttcccaatcagctaccgtcaacattgagcacaaaactgttaaaattgttttcattccagcgtac 40329931  T
Q  309 catgcgatcaggcgtgggaattgcttcagaatg 341  Q
    |||||||||||||||||| ||| ||||||||||    
T  40329930 catgcgatcaggcgtggggattacttcagaatg 40329898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 35133326 - 35133648
Alignment:
Q  19 tggtaagtggaggcgtgcacagtgaggagctgaatggagatcatggagtctgagtaacaaaccatttcgtcaatacctaaatcaatggccagcagaatac 118  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35133326 tggtaagtggaggcgtgcacagtaaggagctgaattgagatcatggagtctgagtaacaaaccatttcgtcaatacctaaatcaatggtcagcagaatac 35133425  T
Q  119 cacggtgtattgctgtaagctcggcaaacaaaatgtcagaacttgttgtaatatagccagagaaacctttaagaaataaacctgcataatttcttatgat 218  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35133426 cacggtgtattgctgtaagctcggcaaacaatatgtcataacttgttgtaatatagccagagaaacctttaagaaataaacctgcataatttcttatgat 35133525  T
Q  219 tccaccaaaacccgctctagtaggagttcccaagcagctgccgtcaacattgagcacaaaactgttaaaattgttttcattccagcgaaccatgcgatca 318  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35133526 tccaccaaaacccgctctaataggagatcccaagcagctaccgtcaacattgagcacaaaactgttaaaattgttttcattccagcgtaccatgcgatca 35133625  T
Q  319 ggcgtgggaattgcttcagaatg 341  Q
    |||||||| ||  ||||||||||    
T  35133626 ggcgtggggataacttcagaatg 35133648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 341
Target Start/End: Complemental strand, 19267466 - 19267134
Alignment:
Q  9 agcataggcgtggtaagtggaggcgtgcacagtgaggagctgaatggagatcatggagtctgagtaacaaaccatttcgtcaatacctaaatcaatggcc 108  Q
    ||||||||| |||||||||  ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  19267466 agcataggcatggtaagtgatggcatgcatagtgaggagctgaatggagatcatggagtccgagtaacaaaccatttcttcaatacctaaatcaatggcc 19267367  T
Q  109 agcagaataccacggtgtattgctgtaagctcggcaaacaaaatgtcagaacttgttgtaatatagccagagaaacctttaagaaataaacctgcataat 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||    
T  19267366 agcagaataccacggtgtattgctgtaagctcggcaaacaatatgtcagaacttgctgtaatatatccagagaaacctttaagaaataaacttgcataat 19267267  T
Q  209 ttcttatgattccaccaaaacccgctctagtaggagttcccaagcagctgccgtcaacattgagcacaaaactgttaaaattgttttcattccagcgaac 308  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  19267266 ttcttatgattccaccaaaacccgctctaataggagttcccaagcagctaccgtcaacattaagcacaaaactgttaaaattgttttcattccagcgtac 19267167  T
Q  309 catgcgatcaggcgtgggaattgcttcagaatg 341  Q
    | ||||| |||||||||  ||| ||||||||||    
T  19267166 cgtgcgaccaggcgtggtgattacttcagaatg 19267134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 3777146 - 3777477
Alignment:
Q  9 agcataggcgtggtaagtggaggcgtgcacagtgaggagctgaatggagatcatggagtctgagtaacaaaccatttcgtcaatacctaaatcaatggcc 108  Q
    ||||||||| |||||||||  ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  3777146 agcataggcatggtaagtgatggcatgcacagtaaggagctgaatggagatcatggagtccgagtaacaaaccatttcttcaatacctaaatcaatggcc 3777245  T
Q  109 agcagaataccacggtgtattgctgtaagctcggcaaacaaaatgtcagaacttgttgtaatatagccagagaaacctttaagaaataaacctgcataat 208  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  3777246 agcagaataccacggtgtattgctgttagctcggcaaacaatatgtcagaacttgctgtaatatatccagagaaacctttaagaaataaacctgcataat 3777345  T
Q  209 ttcttatgattccaccaaaacccgctctagtaggagttcccaagcagctgccgtcaacattgagcacaaaactgttaaaattgttttcattccagcgaac 308  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||    
T  3777346 ttcttatgattccaccaaaacccgctctaataggagttcccaagcagctacc-tcaacattaagcacaaaactgttaaaattgttttcattccagcgtac 3777444  T
Q  309 catgcgatcaggcgtgggaattgcttcagaatg 341  Q
    | ||||| |||||||||| ||| ||||||||||    
T  3777445 cgtgcgaccaggcgtggggattacttcagaatg 3777477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 41985505 - 41985355
Alignment:
Q  9 agcataggcgtggtaagtggaggcgtgcacagtgaggagctgaatggagatcatggagtctgagtaacaaaccatttcgtcaatacctaaatcaatggcc 108  Q
    ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||| || |||||||||||||||||||    
T  41985505 agcataggcatggtaagtggaggcgtgcacaataaggagctgaatggagatcatggagtccgagtaacaaatcattttgttaatacctaaatcaatggcc 41985406  T
Q  109 agcagaataccacggtgtattgctgtaagctcggcaaacaaaatgtcagaa 159  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  41985405 agcagaataccacggtgtattgttgtaagctcgacaaacaatatgtcagaa 41985355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 22902084 - 22902422
Alignment:
Q  9 agcataggcgtggtaagtggaggcgtgcacagtgaggagctgaatggagat-----catggagtctgagtaacaaaccatttcgtcaatacctaaatcaa 103  Q
    |||||||| ||||||| ||||||| ||| |||||||||||||||||||||      ||||||||| |||||||||||||||||||| ||| || |||| |    
T  22902084 agcataggtgtggtaaatggaggcatgctcagtgaggagctgaatggagaggagagcatggagtccgagtaacaaaccatttcgtcgatatctgaatcta 22902183  T
Q  104 tggccagcagaataccacggtgtattgctgtaagctcggcaaacaaaatgtcagaacttgttgtaatatagccagagaaacctttaagaaataaacctgc 203  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||    
T  22902184 tggccagcagaataccacggtggattgctgtaagctcggcaaacaaaatgtcaaaacttgttgaaatataaccagagaaacctttaaggaataaacctgc 22902283  T
Q  204 ataatttcttatgattccaccaaaacccgctctagta-ggagttcccaagcagctgccgtcaacattgagcacaaaactgttaaaattgttttcattcca 302  Q
    | ||||||| |||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||  ||||| ||| | ||||||||    
T  22902284 agaatttctgatgattccaccaaaacccgctctaatagggagttcccaagcagctaccatcaacattgagcacaaaacaattaaagttgctgtcattcca 22902383  T
Q  303 gcgaaccatgcgatcaggcgtgggaa-ttgcttcagaatg 341  Q
    ||||||||||||||||||  |||||| |||||||||||||    
T  22902384 gcgaaccatgcgatcagg-atgggaagttgcttcagaatg 22902422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 49011660 - 49011761
Alignment:
Q  54 ggagatcatggagtctgagtaacaaaccatttcgtcaatacctaaatcaatggccagcagaataccacggtgtattgctgtaagctcggcaaacaaaatg 153  Q
    ||||| ||||||||| ||||| ||||||||||| |||||||| || |  |  ||||| ||||  |||||||| || || ||||||||||||| || ||||    
T  49011660 ggagagcatggagtcagagtagcaaaccatttcctcaatacccaattgcactgccaggagaagtccacggtgaatagcagtaagctcggcaagcagaatg 49011759  T
Q  154 tc 155  Q
    ||    
T  49011760 tc 49011761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 79709 - 79404
Alignment:
Q  9 agcataggcgtggtaagtggaggcgtgcacagtgaggagctgaatggagatcatggagtctgagtaacaaaccatttcgtcaatacctaaatcaatggcc 108  Q
    |||||||||||| ||  ||||||| ||| || | ||||| | |||||||| |||||| || ||||||||||||||||||||||||||| |||  ||||||    
T  79709 agcataggcgtgatagatggaggcatgctcattaaggagtttaatggagagcatggaatccgagtaacaaaccatttcgtcaatacctgaatttatggcc 79610  T
Q  109 agcagaataccacggtgtattgctgtaagctcggcaaacaaaatgtcagaacttgttgtaatatagccagagaaacctttaagaaataaacctgcataat 208  Q
    || |||| ||||||||| ||||||| ||||||||| ||||||||||||||| |||||| || ||| || ||||||| | | |  ||||||||| || ||     
T  79609 agaagaagaccacggtggattgctgcaagctcggctaacaaaatgtcagaagttgttgcaagataaccggagaaacatgtgatgaataaacctacagaaa 79510  T
Q  209 ttcttatgattccaccaaaacccgctctagtaggagttcccaagcagctgccgtcaacattgagcacaaaactgttaaaattgttttcattccagcgaac 308  Q
    | |  ||||||||||||||||| |||| | ||||||||||||||||||| || || |||||||||||||||| |||| | ||  |   ||||||||||||    
T  79509 tccggatgattccaccaaaaccagctcgaataggagttcccaagcagctaccatccacattgagcacaaaacagttatagttaatgctattccagcgaac 79410  T
Q  309 catgcg 314  Q
    ||||||    
T  79409 catgcg 79404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 47395732 - 47395839
Alignment:
Q  51 aatggagatcatggagtctgagtaacaaaccatttcgtcaatacctaaatcaatggccagcagaataccacggtgtattgctgtaagctcggcaaacaaa 150  Q
    |||||||| |||||| | |||||||||||||||||||||||| ||| | || |||| ||| |||| |||| | || ||||| ||||||||||||||||||    
T  47395732 aatggagagcatggaatatgagtaacaaaccatttcgtcaatgcctgattctatgggcagaagaagaccatgatggattgcagtaagctcggcaaacaaa 47395831  T
Q  151 atgtcaga 158  Q
    ||||||||    
T  47395832 atgtcaga 47395839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 277
Target Start/End: Complemental strand, 14761841 - 14761706
Alignment:
Q  142 gcaaacaaaatgtcagaacttgttgtaatatagccagagaaacctttaagaaataaacctgcataatttcttatgattccaccaaaacccgctctagtag 241  Q
    |||||||| ||||||||  |||||| || ||| || |  |||||| ||| ||| ||||| ||| | || | ||| ||||| ||| |||| ||||||||||    
T  14761841 gcaaacaatatgtcagaggttgttgaaagataacccgcaaaacctgtaataaaaaaaccagcagagttccatataattccgccataaccagctctagtag 14761742  T
Q  242 gagttcccaagcagctgccgtcaacattgagcacaa 277  Q
    ||| |||||| ||||| ||||| |||||||||||||    
T  14761741 gagatcccaaacagctcccgtcgacattgagcacaa 14761706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 26975303 - 26975243
Alignment:
Q  217 attccaccaaaacccgctctagtaggagttcccaagcagctgccgtcaacattgagcacaa 277  Q
    ||||| ||| |||| ||||||||||||| |||||| ||||| ||||| |||||||||||||    
T  26975303 attccgccataaccagctctagtaggagatcccaaacagctcccgtcgacattgagcacaa 26975243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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