View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3815_low_7 (Length: 320)

Name: NF3815_low_7
Description: NF3815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3815_low_7
NF3815_low_7
[»] chr3 (14 HSPs)
chr3 (17-320)||(38043674-38043977)
chr3 (19-320)||(48838721-48839021)
chr3 (17-267)||(50904858-50905109)
chr3 (37-196)||(38028852-38029008)
chr3 (37-196)||(38040167-38040323)
chr3 (37-151)||(38024961-38025075)
chr3 (37-151)||(38031413-38031527)
chr3 (37-196)||(50909858-50910014)
chr3 (37-187)||(38033865-38034012)
chr3 (37-187)||(38036879-38037026)
chr3 (37-196)||(55084682-55084840)
chr3 (37-151)||(50911955-50912069)
chr3 (37-133)||(48840797-48840893)
chr3 (291-320)||(50905127-50905156)
[»] chr4 (13 HSPs)
chr4 (21-320)||(17970066-17970369)
chr4 (38-112)||(27444881-27444955)
chr4 (17-112)||(27502873-27502968)
chr4 (40-112)||(27557468-27557540)
chr4 (19-80)||(27513844-27513905)
chr4 (55-112)||(27554288-27554345)
chr4 (37-113)||(27431234-27431310)
chr4 (37-109)||(27498397-27498469)
chr4 (37-107)||(27469444-27469514)
chr4 (40-81)||(27501327-27501368)
chr4 (37-110)||(27505788-27505861)
chr4 (19-107)||(27486967-27487055)
chr4 (55-107)||(27523507-27523559)
[»] chr2 (1 HSPs)
chr2 (21-320)||(3073336-3073639)
[»] chr8 (2 HSPs)
chr8 (37-196)||(21604840-21604996)
chr8 (37-151)||(21607382-21607496)
[»] chr5 (2 HSPs)
chr5 (37-81)||(1754327-1754371)
chr5 (37-112)||(1756843-1756918)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 38043977 - 38043674
Alignment:
Q  17 agtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgt 116  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  38043977 agtcttgaaacgaagtttgattcaagtatgacatagggatcacaaaccgcttcatttcctctccaaagtacactgcaagatagctctttggcacatttgt 38043878  T
Q  117 gactttcgatgatgtttggctacttctaaatgaagcccttactatagctgcaggtaaatggaagcccattttaaatgtttcaaagaataagcttaagctc 216  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38043877 gactttcaatgatgtttggctgcttctaaatgaagcccttactatagctgcaggtaaatggaagcccattttaaatgtttcaaagaataagcttaagctc 38043778  T
Q  217 tcaaatttacgaaaaaagtatttatcttttgatgcttcagcgtgtgaatgacctgtgatttctgtgagggaaattagtgtatttatagtcttcaagagtt 316  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38043777 tcaaatttacgtaaaaagtatttatcttttgatgcttcagcgtgtgaatgacttgtgatttctgtgagggaaattagtgtatttatagtcttcaagagtt 38043678  T
Q  317 tctt 320  Q
    ||||    
T  38043677 tctt 38043674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 48838721 - 48839021
Alignment:
Q  19 tcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtga 118  Q
    |||||||| ||||  || |||| ||| |||| ||| ||||||||||||||||||||||||| || |||  |  ||||||||| | ||||||||||  |||    
T  48838721 tcttgaaatgaagattggttcaggtaggacacgggaatcacaaaccgcttcatttcctctcgat-gtatgccacaagatagcccgttggcacattcatga 48838819  T
Q  119 ctttcgatgatgttt-ggctacttctaaatgaagcccttactatagctgcaggtaaatggaagcccattttaaatgtttcaaagaataagcttaagctct 217  Q
    ||||| ||||||||| ||||||| ||||| |  ||| ||  ||| |||||||||||| |||||||| |  |||||||||||||||  ||||| || ||||    
T  48838820 ctttcaatgatgttttggctactgctaaaggt-gccattcttattgctgcaggtaaacggaagcccttgctaaatgtttcaaagagcaagctaaaactct 48838918  T
Q  218 caaatttacgaaaaaagtatttatcttttgatgcttcagcgtgtgaatgacctgtgatttctgtgagggaaattagtgtatttatagtcttcaagagttt 317  Q
    |||||||| | ||||||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||    
T  48838919 caaatttaaggaaaaagtatttatcttttgatgcttgagtatgtgaatgacttgtgatttctgtgagggaaagttgtgcatttatagtcttcaagagttt 48839018  T
Q  318 ctt 320  Q
    |||    
T  48839019 ctt 48839021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 50904858 - 50905109
Alignment:
Q  17 agtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgt 116  Q
    |||||||||| ||||| || |||||||| |||||  |||||||||||||||||||||| |||||| |||| ||||||||||| | |||||||||||||||    
T  50904858 agtcttgaaatgaagtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgt 50904957  T
Q  117 gactttcgatgatgtttggctacttctaaatgaagcccttactatagctgcaggtaaatggaagcccattttaaatgtttcaaagaataagcttaagctc 216  Q
      |||| | ||||| ||||||||| ||||| |||||||||  ||||||||| ||||||  |||||||||||||||||||||||| || |  || || |||    
T  50904958 cgcttttgttgatgcttggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattttaaatgtttcaaacaacagactaaacctc 50905057  T
Q  217 tcaaattt-acgaaaaaagtatttatcttttgatgcttcagcgtgtgaatga 267  Q
    |||||||| | ||||| ||||||||||||||||||||| ||  |||||||||    
T  50905058 tcaaatttaaggaaaagagtatttatcttttgatgcttgagtatgtgaatga 50905109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 38028852 - 38029008
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgtttggc 136  Q
    |||||||||||| ||||||| ||||| |||||||||| ||||||| |||| ||||||||||||| ||||||||||||    |||||   |||||||||||    
T  38028852 ttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt---tgatgtttggc 38028948  T
Q  137 tacttctaaatgaagcccttactatagctgcaggtaaatggaagcccattttaaatgttt 196  Q
    |||| || |||||||||| |   ||||||||||||||| |||| ||||||| ||||||||    
T  38028949 tactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccatttcaaatgttt 38029008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 38040167 - 38040323
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgtttggc 136  Q
    |||||||||||| ||||||| ||||| |||||||||| ||||||| |||| ||||||||||||| ||||||||||||    |||||   |||||||||||    
T  38040167 ttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt---tgatgtttggc 38040263  T
Q  137 tacttctaaatgaagcccttactatagctgcaggtaaatggaagcccattttaaatgttt 196  Q
    |||| || |||||||||| |   |||||||||| |||| | || ||||||| ||||||||    
T  38040264 tactgctgaatgaagcccgtctaatagctgcagataaacgaaaacccatttcaaatgttt 38040323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 38024961 - 38025075
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgtttggc 136  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| | || ||||||||||||| |||||| |||||     |||| ||||||| |||||    
T  38024961 ttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagcttttgatgatgcttggc 38025060  T
Q  137 tacttctaaatgaag 151  Q
    ||||| |||||||||    
T  38025061 tacttgtaaatgaag 38025075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 38031413 - 38031527
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgtttggc 136  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| | || ||||||||||||| |||||| |||||     |||| ||||||| |||||    
T  38031413 ttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagcttttgatgatgcttggc 38031512  T
Q  137 tacttctaaatgaag 151  Q
    ||||| |||||||||    
T  38031513 tacttgtaaatgaag 38031527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 50910014 - 50909858
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgtttggc 136  Q
    |||||||||||||||||||| |||||||||  ||||| ||||||| | || ||||||||||| | ||||||||||||    |||||   |||||||||||    
T  50910014 ttcaagtatgacatggggataacaaaccgcagcatttgctctccaacatacactgcaagataaccctttggcacattcaatacttt---tgatgtttggc 50909918  T
Q  137 tacttctaaatgaagcccttactatagctgcaggtaaatggaagcccattttaaatgttt 196  Q
    |||| ||||||||||| | |   |||||||| |||||| |||| ||||||| ||||||||    
T  50909917 tactgctaaatgaagctcgtctaatagctgctggtaaacggaaacccatttcaaatgttt 50909858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 38033865 - 38034012
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgtttggc 136  Q
    |||||||||||| ||||||| |||||||||||||||| |||||||  ||| ||||||||||||| ||||||||||||     ||||   ||||||||| |    
T  38033865 ttcaagtatgacgtggggataacaaaccgcttcatttgctctccaatgtacactgcaagatagccctttggcacattcaatgcttt---tgatgtttgac 38033961  T
Q  137 tacttctaaatgaagcccttactatagctgcaggtaaatggaagcccattt 187  Q
    |||| || |||||||||| |   ||||||||||||||| |||| |||||||    
T  38033962 tactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccattt 38034012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 38036879 - 38037026
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgtttggc 136  Q
    |||||||||| ||||||||  |||||||| ||||||| ||||||| |||| ||||||||||||| ||||||||||||    |||||    ||||||||||    
T  38036879 ttcaagtatggcatggggacaacaaaccgtttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt---ggatgtttggc 38036975  T
Q  137 tacttctaaatgaagcccttactatagctgcaggtaaatggaagcccattt 187  Q
    |||| ||||| ||||||| |   ||||||||||||||| |||| |||||||    
T  38036976 tactgctaaaggaagcccgtctaatagctgcaggtaaacggaaacccattt 38037026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 55084840 - 55084682
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgtttggc 136  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||| | || ||||||||| | |  |||||||||||      ||| |||||||||||||    
T  55084840 ttcaagtaagacatagggatcacaaaccgcttcattttctctccaacatacactgcaagacacccttttggcacattcacagattttgatgatgtttggc 55084741  T
Q  137 tacttctaaatgaagcccttactatagctgcaggtaaatggaagcccattttaaatgttt 196  Q
    |||   ||||||||| ||||   ||||||||||||||| ||||  |||||| ||||||||    
T  55084740 tacccgtaaatgaagtccttctaatagctgcaggtaaacggaa-accatttcaaatgttt 55084682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 50911955 - 50912069
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgtttggc 136  Q
    |||||||||||| |||||||||||||||| ||||| |  |||||| | || || |||||||||| ||||||||||||    ||||| ||||||| |||||    
T  50911955 ttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttttgatgatgcttggc 50912054  T
Q  137 tacttctaaatgaag 151  Q
    ||| | |||||||||    
T  50912055 tacctgtaaatgaag 50912069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 48840797 - 48840893
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgttt 133  Q
    |||||||||| ||||||||| ||||| |||||||| ||||||||  |||| | ||||||||| | ||||||||||| ||  ||||| ||||||||||    
T  48840797 ttcaagtatggcatggggattacaaatcgcttcatctcctctccgacgtacaatgcaagatatccctttggcacatctgctacttttgatgatgttt 48840893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 320
Target Start/End: Original strand, 50905127 - 50905156
Alignment:
Q  291 tagtgtatttatagtcttcaagagtttctt 320  Q
    ||||||||||||||||||||||||||||||    
T  50905127 tagtgtatttatagtcttcaagagtttctt 50905156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 320
Target Start/End: Complemental strand, 17970369 - 17970066
Alignment:
Q  21 ttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgact 120  Q
    |||||| ||||| || |||||||||||| | |||||||||||||||||||||||||||||| |||| || |||||||| | ||||||||||||||  |||    
T  17970369 ttgaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatttgctact 17970270  T
Q  121 ttcgatgatgtttggctacttctaaatgaagcccttactatagctgcaggtaaatggaagcccatt-----ttaaatgtttcaaagaataagcttaagct 215  Q
    ||| |||| |||||||| || |||||||   |||||  |||||||||||||||| |||||||||||     |||||||  |||||||| ||||| |||||    
T  17970269 ttcaatgacgtttggctgctgctaaatgtcacccttcttatagctgcaggtaaacggaagcccattctaaattaaatgcgtcaaagaacaagctaaagct 17970170  T
Q  216 ctcaaatttacgaaaaaagtatttatcttttgatgcttcagcgtgtgaatgacctgtgatttctgtgagggaaattagtgtatttatagtcttcaagagt 315  Q
    ||| | || |  |||||| |||||||||||||||  |  ||  |||||||||| ||||||   |||||  |||  |||||||||||||||||||||||||    
T  17970169 ctcga-ttaagaaaaaaaatatttatcttttgattatcgagtatgtgaatgacttgtgatggttgtgaaagaatgtagtgtatttatagtcttcaagagt 17970071  T
Q  316 ttctt 320  Q
    |||||    
T  17970070 ttctt 17970066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 27444881 - 27444955
Alignment:
Q  38 tcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacat 112  Q
    |||||||||| || ||||||||||||| |||||||||||||||| |||| ||||||||||| | |||||||||||    
T  27444881 tcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttggcacat 27444955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 27502873 - 27502968
Alignment:
Q  17 agtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacat 112  Q
    |||||||||| ||||| |||||||| |||||||| || ||||||||||||||||| | ||||||  | ||||| |||||||| |  ||||||||||    
T  27502873 agtcttgaaatgaagtttgattcaaatatgacattggaatcacaaaccgcttcatcttctctcctacataaacggcaagatatccttttggcacat 27502968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 27557540 - 27557468
Alignment:
Q  40 aagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacat 112  Q
    ||||||||||| ||||||||||||| |||||||||||||||| | || || |||||||| | | |||||||||    
T  27557540 aagtatgacattgggatcacaaacctcttcatttcctctccaacatatacggcaagatatccccttggcacat 27557468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 27513844 - 27513905
Alignment:
Q  19 tcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcatttcctctcc 80  Q
    ||||| ||||| || || ||||||||||| || |||||||||||||||||||||| ||||||    
T  27513844 tcttggaacgaggtttggttcaagtatgatattgggatcacaaaccgcttcattttctctcc 27513905  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 27554345 - 27554288
Alignment:
Q  55 atcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacat 112  Q
    ||||||||||||||||||||||||||| | || |||||||| || | |||||||||||    
T  27554345 atcacaaaccgcttcatttcctctccaacatatactgcaaggtatccctttggcacat 27554288  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 27431234 - 27431310
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatt 113  Q
    ||||||||||| || ||||||||||||| ||||||||| || ||| | || ||||||| ||| | ||||||||||||    
T  27431234 ttcaagtatgatattgggatcacaaacctcttcatttcatccccaacatatactgcaatatatccctttggcacatt 27431310  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 27498469 - 27498397
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggca 109  Q
    ||||||||||| || ||||||||||| || ||||||||||||||| | || ||||| ||||| | ||||||||    
T  27498469 ttcaagtatgatatagggatcacaaaacgtttcatttcctctccaacatatactgctagatatccctttggca 27498397  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 27469514 - 27469444
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttgg 107  Q
    ||||| ||||| || |||||||||||||||||||||| ||||||  |||| ||||| ||||| | ||||||    
T  27469514 ttcaaatatgatatagggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg 27469444  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 27501368 - 27501327
Alignment:
Q  40 aagtatgacatggggatcacaaaccgcttcatttcctctcca 81  Q
    |||||||| || |||||||||||||| |||||||||||||||    
T  27501368 aagtatgatattgggatcacaaaccgtttcatttcctctcca 27501327  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 27505788 - 27505861
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcac 110  Q
    ||||||||||| |  || ||||||||||||||||||| ||||||  |||| ||||| ||||| | |||||||||    
T  27505788 ttcaagtatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagatacccctttggcac 27505861  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 27487055 - 27486967
Alignment:
Q  19 tcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttgg 107  Q
    ||||||||||| |  || || |||||||| |  |||||||||||||||||||||| ||||||  |||| ||||| ||||| | ||||||    
T  27487055 tcttgaaacgatggttggtttaagtatgataaagggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg 27486967  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 27523507 - 27523559
Alignment:
Q  55 atcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttgg 107  Q
    ||||||||||||||||||| ||||||  |||| ||||| ||||||| ||||||    
T  27523507 atcacaaaccgcttcattttctctcctacgtacactgctagatagccctttgg 27523559  T

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Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 320
Target Start/End: Complemental strand, 3073639 - 3073336
Alignment:
Q  21 ttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgact 120  Q
    |||||| ||||| || |||||||||||| | |||||||||||||||||||||||||||||| |||| || |||||||| | ||||||||||||||  |||    
T  3073639 ttgaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatttgctact 3073540  T
Q  121 ttcgatgatgtttggctacttctaaatgaagcccttactatagctgcaggtaaatggaagcccatt-----ttaaatgtttcaaagaataagcttaagct 215  Q
    ||| |||| |||||||| || |||||||   |||||  |||||||||||||||| |||||||||||     |||||||  |||||||| ||||| |||||    
T  3073539 ttcaatgacgtttggctgctgctaaatgtcacccttcttatagctgcaggtaaacggaagcccattctaaattaaatgcgtcaaagaacaagctaaagct 3073440  T
Q  216 ctcaaatttacgaaaaaagtatttatcttttgatgcttcagcgtgtgaatgacctgtgatttctgtgagggaaattagtgtatttatagtcttcaagagt 315  Q
    ||| | || |  |||||| |||||||||||||||  |  ||  |||||||||| ||||||   |||||  |||  |||||||||||||||||||||||||    
T  3073439 ctcga-ttaagaaaaaaaatatttatcttttgattatcgagtatgtgaatgacttgtgatggttgtgaaagaatgtagtgtatttatagtcttcaagagt 3073341  T
Q  316 ttctt 320  Q
    |||||    
T  3073340 ttctt 3073336  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 21604840 - 21604996
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgtttggc 136  Q
    |||||||||||| ||||||| ||||| |||||||||| ||||||  | || ||||||||||||| ||||||||||||    |||||   |||||||||||    
T  21604840 ttcaagtatgacgtggggataacaaatcgcttcatttgctctcctacttacactgcaagatagccctttggcacattcaatacttt---tgatgtttggc 21604936  T
Q  137 tacttctaaatgaagcccttactatagctgcaggtaaatggaagcccattttaaatgttt 196  Q
    |||| || |||||||||| |   ||||||||||||||| |||| ||||||| ||||||||    
T  21604937 tactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccatttcaaatgttt 21604996  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 21607382 - 21607496
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacatttgtgactttcgatgatgtttggc 136  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| | || || |||||||| | |||||| |||||    ||||| ||||||| |||||    
T  21607382 ttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatataccgcaagatatccctttggtacattcacaacttttgatgatgcttggc 21607481  T
Q  137 tacttctaaatgaag 151  Q
    ||||| |||||||||    
T  21607482 tacttgtaaatgaag 21607496  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 1754327 - 1754371
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctcca 81  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||    
T  1754327 ttcaagtatgatacggggatcacaaaccgcttcatttcttctcca 1754371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 1756843 - 1756918
Alignment:
Q  37 ttcaagtatgacatggggatcacaaaccgcttcatttcctctccatcgtaaactgcaagatagctctttggcacat 112  Q
    ||||||||||| || ||||||||||||||||||  || ||||||| | |  ||||||||||||| |||||| ||||    
T  1756843 ttcaagtatgatattgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttggtacat 1756918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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