View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3816_high_4 (Length: 337)
Name: NF3816_high_4
Description: NF3816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3816_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 36001148 - 36000837
Alignment:
| Q |
12 |
atgaattgcaaaccgtgtgactatggttccgatgcttcgatttcttctgtctatacatgttggtgattcttgtgcataaccaagtggtttcatgaaacgg |
111 |
Q |
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| T |
36001148 |
atgaattgcaaaccgtgtgactatggttccgatgcttcgatttcttctgtctatacatgttggtgattcttgtgcataaccaagtggtttcatgaaacgg |
36001049 |
T |
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| Q |
112 |
ttcctctgaccaatttaacttaatgatgcatccataggtgataagctcaccaatgaaagcaccattgtaaaagtatcactatttttccaggtaagtaaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36001048 |
ttcctctgaccaatttaacttaatgatgcatccataggtgataagctcaccaatgaaagcaccattgtaaaagtatcactatttttccaggtaagtaaca |
36000949 |
T |
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| Q |
212 |
atggaaccagataattatattgatcaaggaatgacataatacagtggatatccttagtacaaagtcaaagaatacaatagtactagaaagagaaagaaga |
311 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36000948 |
atggaaccggataattatattgatcaaggaatgacataatacagtggatatccttagtacaaagtcaaagaatacaatagtactagaaagagaaagaaga |
36000849 |
T |
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| Q |
312 |
agagtgtaagtg |
323 |
Q |
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|||||||||||| |
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| T |
36000848 |
agagtgtaagtg |
36000837 |
T |
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