View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3816_high_6 (Length: 304)

Name: NF3816_high_6
Description: NF3816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3816_high_6
NF3816_high_6
[»] chr7 (19 HSPs)
chr7 (247-296)||(3078497-3078546)
chr7 (238-296)||(3078555-3078613)
chr7 (238-296)||(3081346-3081403)
chr7 (238-296)||(15695427-15695485)
chr7 (238-296)||(15702407-15702465)
chr7 (238-304)||(21958470-21958536)
chr7 (238-296)||(21958537-21958595)
chr7 (238-295)||(34456446-34456503)
chr7 (238-296)||(4341295-4341353)
chr7 (253-296)||(3078650-3078693)
chr7 (253-296)||(42785902-42785945)
chr7 (238-296)||(42785954-42786011)
chr7 (238-296)||(48478289-48478346)
chr7 (253-295)||(48478356-48478398)
chr7 (255-296)||(4341229-4341270)
chr7 (255-296)||(48477961-48478002)
chr7 (255-296)||(48478027-48478068)
chr7 (255-296)||(48478093-48478134)
chr7 (255-296)||(48478223-48478264)
[»] chr3 (23 HSPs)
chr3 (21-176)||(8578716-8578860)
chr3 (238-296)||(5938737-5938795)
chr3 (240-296)||(19441069-19441125)
chr3 (239-294)||(45227277-45227332)
chr3 (238-296)||(19480035-19480093)
chr3 (244-296)||(18111591-18111643)
chr3 (238-296)||(5938804-5938862)
chr3 (238-296)||(5938871-5938929)
chr3 (254-296)||(5939005-5939047)
chr3 (238-296)||(18111524-18111582)
chr3 (238-296)||(19384282-19384340)
chr3 (238-296)||(28034676-28034734)
chr3 (254-296)||(28034743-28034785)
chr3 (253-296)||(29897183-29897226)
chr3 (254-296)||(5835635-5835677)
chr3 (238-296)||(5938938-5938996)
chr3 (131-239)||(8553460-8553561)
chr3 (201-239)||(8584154-8584192)
chr3 (238-296)||(18111457-18111515)
chr3 (238-296)||(19384220-19384278)
chr3 (254-296)||(19441136-19441178)
chr3 (254-296)||(28034809-28034851)
chr3 (256-296)||(29897128-29897168)
[»] scaffold0046 (1 HSPs)
scaffold0046 (238-296)||(90494-90552)
[»] chr8 (11 HSPs)
chr8 (238-288)||(3165849-3165899)
chr8 (238-296)||(25336616-25336674)
chr8 (238-293)||(25336552-25336607)
chr8 (238-296)||(3165916-3165973)
chr8 (238-296)||(5557902-5557959)
chr8 (238-296)||(3165982-3166040)
chr8 (238-296)||(5557836-5557893)
chr8 (238-296)||(20810385-20810443)
chr8 (239-288)||(3165783-3165832)
chr8 (255-296)||(5557770-5557811)
chr8 (262-302)||(20810342-20810382)
[»] chr6 (16 HSPs)
chr6 (238-296)||(5249991-5250049)
chr6 (238-296)||(28145162-28145220)
chr6 (239-296)||(26620431-26620488)
chr6 (239-296)||(26726410-26726467)
chr6 (238-295)||(28145230-28145287)
chr6 (254-296)||(6406611-6406653)
chr6 (238-296)||(28145095-28145153)
chr6 (254-296)||(31113150-31113192)
chr6 (255-296)||(34255591-34255632)
chr6 (253-296)||(5249939-5249982)
chr6 (253-296)||(28145296-28145339)
chr6 (253-299)||(33296078-33296124)
chr6 (255-296)||(29934616-29934657)
chr6 (255-296)||(34255525-34255566)
chr6 (255-296)||(34255657-34255698)
chr6 (238-301)||(31113201-31113265)
[»] chr4 (28 HSPs)
chr4 (241-296)||(31663564-31663619)
chr4 (238-296)||(5578236-5578294)
chr4 (238-299)||(6735363-6735425)
chr4 (253-296)||(4852583-4852626)
chr4 (253-296)||(4852652-4852695)
chr4 (254-296)||(13713188-13713230)
chr4 (254-304)||(31663376-31663426)
chr4 (238-296)||(31663427-31663485)
chr4 (238-295)||(1505993-1506050)
chr4 (255-304)||(1506184-1506233)
chr4 (238-296)||(1506125-1506183)
chr4 (238-296)||(5599930-5599987)
chr4 (253-295)||(5599997-5600039)
chr4 (254-296)||(13713121-13713163)
chr4 (254-296)||(13713321-13713363)
chr4 (238-296)||(14190500-14190557)
chr4 (254-296)||(31663308-31663350)
chr4 (255-296)||(1506059-1506100)
chr4 (247-288)||(5578441-5578482)
chr4 (255-296)||(5599798-5599839)
chr4 (255-296)||(5599864-5599905)
chr4 (255-296)||(5909075-5909116)
chr4 (259-296)||(5909141-5909178)
chr4 (238-283)||(6735431-6735476)
chr4 (255-296)||(13702628-13702669)
chr4 (255-296)||(13713255-13713296)
chr4 (253-301)||(13713383-13713431)
chr4 (244-296)||(31663229-31663281)
[»] scaffold0927 (2 HSPs)
scaffold0927 (238-296)||(3576-3634)
scaffold0927 (238-296)||(3643-3701)
[»] scaffold0043 (2 HSPs)
scaffold0043 (238-296)||(69747-69805)
scaffold0043 (238-295)||(69814-69871)
[»] chr2 (12 HSPs)
chr2 (238-296)||(31346814-31346872)
chr2 (238-296)||(31314998-31315056)
chr2 (254-296)||(31315065-31315107)
chr2 (254-296)||(31315135-31315177)
chr2 (239-293)||(31346934-31346988)
chr2 (238-304)||(31347000-31347066)
chr2 (238-296)||(31347067-31347125)
chr2 (247-304)||(31315195-31315252)
chr2 (255-296)||(2743383-2743424)
chr2 (255-296)||(2743449-2743490)
chr2 (255-296)||(2743515-2743556)
chr2 (262-299)||(11951282-11951319)
[»] chr1 (9 HSPs)
chr1 (238-288)||(15088591-15088641)
chr1 (238-296)||(22207980-22208038)
chr1 (238-288)||(22211199-22211249)
chr1 (253-288)||(14114823-14114858)
chr1 (253-304)||(22207700-22207751)
chr1 (238-288)||(22207649-22207699)
chr1 (254-296)||(22207777-22207819)
chr1 (238-296)||(51844364-51844422)
chr1 (253-293)||(14114754-14114794)
[»] scaffold0060 (1 HSPs)
scaffold0060 (254-301)||(39927-39974)
[»] chr5 (5 HSPs)
chr5 (253-296)||(41528655-41528698)
chr5 (238-296)||(41528457-41528514)
chr5 (238-296)||(41528523-41528580)
chr5 (238-296)||(41528589-41528646)
chr5 (247-296)||(37368910-37368959)


Alignment Details
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 3078497 - 3078546
Alignment:
Q  247 aaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3078497 aaatgcaaaaactttgtttgttacaacgaagagataatgtagtctatgag 3078546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 3078555 - 3078613
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||| ||||||||||||| ||||| ||||||||| ||||||||||| |||||||    
T  3078555 catagtaacgaatgcaaaaactccgtttgctacaacgaatagataatgtagcctatgag 3078613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 3081403 - 3081346
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||    
T  3081403 catagtaacaaatgcaaaaactccgtttgctacaacgaa-agataatgtagcctatgag 3081346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 15695427 - 15695485
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||| ||||||| ||||| |||||| |||||||||||||| |||||||    
T  15695427 catagtaacaaatgcgaaaactccgtttgctacaactaagagataatgtagcctatgag 15695485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 15702407 - 15702465
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||| ||||||| ||||| |||||| |||||||||||||| |||||||    
T  15702407 catagtaacaaatgcgaaaactccgtttgctacaactaagagataatgtagcctatgag 15702465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 21958470 - 21958536
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 304  Q
    ||||||||||||||| || | || ||||| ||||||||||||||||||||| ||||||| |||||||    
T  21958470 catagtaacaaatgcgaagattccgtttgctacaacgaagagataatgtagcctatgaggtatggct 21958536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 21958537 - 21958595
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||||| ||| |||||||    
T  21958537 catagtaacaaatgcgaaaactccgtttgctacaacgaagagataatatagcctatgag 21958595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 34456446 - 34456503
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatga 295  Q
    |||||||| |||||  ||||||| ||||| ||||||||||||||||||||||||||||    
T  34456446 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagtctatga 34456503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 4341353 - 4341295
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||| ||||  ||||||| ||||| ||||||||||||||||||||| |||||||    
T  4341353 catagtaacgaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatgag 4341295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 3078650 - 3078693
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||||||||| |||||||| |||||||||||| |||||||    
T  3078650 aaaaactctgtttgctacaacgatgagataatgtagcctatgag 3078693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 42785902 - 42785945
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||    
T  42785902 aaaaactccgtttgctacaacgaagagataatgtagcctatgag 42785945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 42785954 - 42786011
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  42785954 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 42786011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 48478346 - 48478289
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  48478346 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 48478289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 48478398 - 48478356
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatga 295  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||    
T  48478398 aaaaactccgtttgctacaacgaagagataatgtagcctatga 48478356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 4341270 - 4341229
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  4341270 aaactccgtttgctacaacgaagagataatgtagcctatgag 4341229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 48478002 - 48477961
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  48478002 aaactccgtttgctacaacgaagagataatgtagcctatgag 48477961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 48478068 - 48478027
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  48478068 aaactccgtttgctacaacgaagagataatgtagcctatgag 48478027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 48478134 - 48478093
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  48478134 aaactccgtttgctacaacgaagagataatgtagcctatgag 48478093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 48478264 - 48478223
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  48478264 aaactccgtttgctacaacgaagagataatgtagcctatgag 48478223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 8578716 - 8578860
Alignment:
Q  21 agaggatacataaggaagtattatcttttagtttatgaatttatgcataagtgtcgtgtgcgctgtggagggttaaatagtcaagacttagtagaatctt 120  Q
    ||||||| |||||| ||  ||||||||||||||||||||||||||||| |||||||||||  |||||||| ||| | || |||||||                 
T  8578716 agaggatccataagcaaaaattatcttttagtttatgaatttatgcatgagtgtcgtgtgaactgtggagagttgactattcaagac------------- 8578802  T
Q  121 ataagttttaaatcttgaat---gcagcattattgtttttgaagttaccacaactacaa 176  Q
     ||||||||| |||||||||   ||||||||||||||||| ||||||||||||||||||    
T  8578803 -taagttttatatcttgaatgcagcagcattattgtttttcaagttaccacaactacaa 8578860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 5938795 - 5938737
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
T  5938795 catagtaacaaatgcgaaaactcagtttgctacaacgaagagataatgtagactatgag 5938737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 19441125 - 19441069
Alignment:
Q  240 tagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||||||    
T  19441125 tagtaacaaatgcgaaaactccgtttgctacgacgaagagataatgtagtctatgag 19441069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 45227277 - 45227332
Alignment:
Q  239 atagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatg 294  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  45227277 atagtaagaaatgtaaaaactctgtttgctacaacgaagagataatgtagcctatg 45227332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 19480035 - 19480093
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||||||||||||||||| |||||  ||||| ||||||||||||||| |||||||    
T  19480035 catagtaacaaatgcaaaaactttgtttcctacaatgaagagataatgtagcctatgag 19480093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 18111643 - 18111591
Alignment:
Q  244 aacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
T  18111643 aacaaatgcgaaaactccgtttgctacaacgaagagataatgtagcctatgag 18111591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 5938862 - 5938804
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||||||| ||||| ||||||||||||||||| ||| |||||||    
T  5938862 catagtaacaaatgtgaaaactccgtttgctacaacgaagagataatatagcctatgag 5938804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 5938929 - 5938871
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||||||| ||||| |||||||||||||| |||||| |||||||    
T  5938929 catagtaacaaatgtgaaaactccgtttgctacaacgaagagatgatgtagcctatgag 5938871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 5939047 - 5939005
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    
T  5939047 aaaactccgtttgctacaacgaagagataatgtagtctatgag 5939005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 18111582 - 18111524
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||| |||||  ||||||| ||||| ||||||||||||||||||||| |||||||    
T  18111582 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatgag 18111524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 19384340 - 19384282
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||| ||||| ||||||| ||||| ||| ||||||||||||||||| |||||||    
T  19384340 catagtaacgaatgcgaaaactccgtttgctacgacgaagagataatgtagcctatgag 19384282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 28034734 - 28034676
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||| | |||||| |||||| ||||||||||| ||||||||| |||||||    
T  28034734 catagtaacaaatccgaaaactttgtttgctacaacgaagaaataatgtagcctatgag 28034676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 28034785 - 28034743
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  28034785 aaaactctgtttgctacaacgaagagataatgtagcctatgag 28034743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 29897226 - 29897183
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||||||||| ||||||||||||||||| |||| ||||||    
T  29897226 aaaaactctgtttgctacaacgaagagataatatagtttatgag 29897183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 5835677 - 5835635
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  5835677 aaaactccgtttgctacaacgaagagataatgtagcctatgag 5835635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 5938996 - 5938938
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||| |||||  |||| || ||||| ||||||||||||||||||||| |||||||    
T  5938996 catagtaataaatgtgaaaattccgtttgctacaacgaagagataatgtagcctatgag 5938938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 8553561 - 8553460
Alignment:
Q  131 aatcttgaatgcagcattattgtttttgaagttaccacaactacaaaaactctgtgattgagcccatatcagccacattcaaggtgatactctgcagtat 230  Q
    |||||||||||  ||||||||| |||| |||||||||||||||||| |        |||||| |  ||||| |||||||  | |||||||||||||||||    
T  8553561 aatcttgaatgtggcattattggttttaaagttaccacaactacaaca-------cattgagtctgtatcaaccacatttgatgtgatactctgcagtat 8553469  T
Q  231 agtatcaca 239  Q
    |||||||||    
T  8553468 agtatcaca 8553460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 8584154 - 8584192
Alignment:
Q  201 agccacattcaaggtgatactctgcagtatagtatcaca 239  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  8584154 agccacattccatgtgatactctgcagtatagtatcaca 8584192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 18111515 - 18111457
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||| |||||||||  ||||| | ||||| ||||||||||||||||||||| |||||||    
T  18111515 cataataacaaatgtgaaaaccccgtttgctacaacgaagagataatgtagcctatgag 18111457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 19384278 - 19384220
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||| ||||| ||||||| ||||| ||| ||||||||||||||||  |||||||    
T  19384278 catagtaacgaatgcgaaaactccgtttgctacgacgaagagataatgtaacctatgag 19384220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 19441178 - 19441136
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| |||||| ||||||||||||||||||||| |||||||    
T  19441178 aaaactttgtttgctacaacgaagagataatgtagcctatgag 19441136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 28034851 - 28034809
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  28034851 aaaactccgtttgctacaacgaagagataatgtagcctatgag 28034809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 29897168 - 29897128
Alignment:
Q  256 aactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||| |||||| |||||||||||||| |||||||    
T  29897168 aactctgtttgctacaacaaagagataatgtagcctatgag 29897128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 90552 - 90494
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||    
T  90552 catagtaacaaatgcgaaaactttgtttgctacaacgaagagataatgtagcctatgag 90494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 3165849 - 3165899
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtag 288  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  3165849 catagtaacaagtgcaaaaactctgtttgctacaacgaagagataatgtag 3165899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 25336674 - 25336616
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||    
T  25336674 catagtaacaaatgtgaaaactctgtttgctacaacgaagagataatgtagcctatgag 25336616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 25336607 - 25336552
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctat 293  Q
    ||||||||||||||  ||||||| ||||| ||||||||||||||||||||| ||||    
T  25336607 catagtaacaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctat 25336552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 3165916 - 3165973
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||| ||||||||||||||||| ||| |||||||||||||| || |||||||    
T  3165916 catagtaacaattgcaaaaactctgtttgctac-acgaagagataatgcagcctatgag 3165973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 5557959 - 5557902
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||| ||||||||| ||||||||||||||||||||| |||||||    
T  5557959 catagtaacaaatgtgaaa-ctctgtttgctacaacgaagagataatgtagcctatgag 5557902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 3165982 - 3166040
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||| ||| |||| ||  |||| ||||||||||||||||||||| |||||||    
T  3165982 catagtaacaagtgcgaaaattccatttgctacaacgaagagataatgtagcctatgag 3166040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 5557893 - 5557836
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  5557893 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 5557836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 20810385 - 20810443
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||| ||||  |||  |||||||| ||||||||||||||||||||| |||||||    
T  20810385 catagtaacgaatgtgaaatatctgtttgctacaacgaagagataatgtagcctatgag 20810443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 3165783 - 3165832
Alignment:
Q  239 atagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtag 288  Q
    |||||||||| ||  |||||| |||||| |||||||||||||||||||||    
T  3165783 atagtaacaagtgtgaaaactttgtttgctacaacgaagagataatgtag 3165832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 5557811 - 5557770
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  5557811 aaactccgtttgctacaacgaagagataatgtagcctatgag 5557770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 20810342 - 20810382
Alignment:
Q  262 gtttgttacaacgaagagataatgtagtctatgagatatgg 302  Q
    ||||| ||||||||||||||||||||| ||||||| |||||    
T  20810342 gtttgctacaacgaagagataatgtagcctatgaggtatgg 20810382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 5249991 - 5250049
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||||||    
T  5249991 catagtaacaaatgcgaaaactctatttgctacaacgaagagataatgtagcctatgag 5250049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 28145220 - 28145162
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||| || |||| ||||| ||||||||||||||||||||| |||||||    
T  28145220 catagtaacaaatgcgaagactccgtttgctacaacgaagagataatgtagcctatgag 28145162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 26620431 - 26620488
Alignment:
Q  239 atagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
T  26620431 atagtaacgaatgcgaaaactccgtttgctacaacgaagagataatgtagcctatgag 26620488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 26726410 - 26726467
Alignment:
Q  239 atagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
T  26726410 atagtaacgaatgcgaaaactccgtttgctacaacgaagagataatgtagcctatgag 26726467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 28145287 - 28145230
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatga 295  Q
    ||||||||| ||||||||| ||| ||||| ||||||||||||||||||||| ||||||    
T  28145287 catagtaacgaatgcaaaatctccgtttgctacaacgaagagataatgtagcctatga 28145230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 6406653 - 6406611
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  6406653 aaaactctgtttgctacaacgaagagataatgtagcctatgag 6406611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 28145153 - 28145095
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||||||| ||||| |||||| |||||||||||||| |||||||    
T  28145153 catagtaacaaatgtgaaaactccgtttgctacaacaaagagataatgtagcctatgag 28145095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 31113150 - 31113192
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  31113150 aaaactctgtttgctacaacgaagagataatgtagcctatgag 31113192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 34255591 - 34255632
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  34255591 aaactctgtttgctacaacgaagagataatgtagcctatgag 34255632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 5249939 - 5249982
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||| |||||||| |||||||||||||||||||||| ||||||    
T  5249939 aaaaattctgtttgctacaacgaagagataatgtagtgtatgag 5249982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 28145339 - 28145296
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||    
T  28145339 aaaatctccgtttgctacaacgaagagataatgtagtctatgag 28145296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 33296078 - 33296124
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatgagata 299  Q
    ||||| || ||||| ||||||||||||||||||||| ||||||||||    
T  33296078 aaaaaatcagtttgctacaacgaagagataatgtagcctatgagata 33296124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 29934616 - 29934657
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  29934616 aaactccgtttgctacaacgaagagataatgtagcctatgag 29934657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 34255525 - 34255566
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  34255525 aaactccgtttgctacaacgaagagataatgtagcctatgag 34255566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 34255657 - 34255698
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  34255657 aaactccgtttgctacaacgaagagataatgtagcctatgag 34255698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 31113201 - 31113265
Alignment:
Q  238 catagtaacaaatgcaaaaac-tctgtttgttacaacgaagagataatgtagtctatgagatatg 301  Q
    ||||||||||||||  ||||| ||| |||| |||||||||||||||||||||  |||||| ||||    
T  31113201 catagtaacaaatgtgaaaacctctatttgctacaacgaagagataatgtagcttatgaggtatg 31113265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 31663564 - 31663619
Alignment:
Q  241 agtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||    
T  31663564 agtaacaaatgtgaaaactctgtttgctacaacgaagagataatgtagcctatgag 31663619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 5578236 - 5578294
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||| ||||| ||| ||||||||| ||||||||||||||||||||| |||||||    
T  5578236 catagtaacgaatgcgaaatctctgtttgctacaacgaagagataatgtagcctatgag 5578294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 6735363 - 6735425
Alignment:
Q  238 catagtaacaaatgcaaaaa-ctctgtttgttacaacgaagagataatgtagtctatgagata 299  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||||||||||  |||||||||    
T  6735363 catagtaacaaatgtaaaaatctctgtttgctacaacgaagagataatgtagcttatgagata 6735425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 4852626 - 4852583
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  4852626 aaaaactctgtttgctacaacgaagagataatgtagcctatgag 4852583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 4852695 - 4852652
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  4852695 aaaaactctgtttgctacaacgaagagataatgtagcctatgag 4852652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 13713230 - 13713188
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  13713230 aaaactctgtttgctacaacgaagagataatgtagcctatgag 13713188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 31663376 - 31663426
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 304  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||||| ||||    
T  31663376 aaaactccgtttgctacaacgaagagataatgtagcctatgagatacggct 31663426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 31663427 - 31663485
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||| |||||  ||||||| ||||| ||||||||||||||||||||| |||||||    
T  31663427 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatgag 31663485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 1506050 - 1505993
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatga 295  Q
    ||||||||| ||||  ||||||| ||||| ||||||||||||||||||||| ||||||    
T  1506050 catagtaacgaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatga 1505993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 1506233 - 1506184
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 304  Q
    |||||| ||||| ||||||||||||||||||||| ||||||| |||||||    
T  1506233 aaactccgtttgctacaacgaagagataatgtagcctatgaggtatggct 1506184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 1506183 - 1506125
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||| ||||  ||||||| ||||| ||||||||||||||||| ||| |||||||    
T  1506183 catagtaacgaatgtgaaaactccgtttgctacaacgaagagataatatagcctatgag 1506125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 5599987 - 5599930
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  5599987 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 5599930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 5600039 - 5599997
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatga 295  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||    
T  5600039 aaaaactccgtttgctacaacgaagagataatgtagcctatga 5599997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 13713163 - 13713121
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  13713163 aaaactccgtttgctacaacgaagagataatgtagcctatgag 13713121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 13713363 - 13713321
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  13713363 aaaactccgtttgctacaacgaagagataatgtagcctatgag 13713321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 14190557 - 14190500
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  14190557 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 14190500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 31663308 - 31663350
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  31663308 aaaactccgtttgctacaacgaagagataatgtagcctatgag 31663350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 1506100 - 1506059
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  1506100 aaactcagtttgctacaacgaagagataatgtagcctatgag 1506059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 5578441 - 5578482
Alignment:
Q  247 aaatgcaaaaactctgtttgttacaacgaagagataatgtag 288  Q
    |||||| ||||||| ||||| |||||||||||||||||||||    
T  5578441 aaatgcgaaaactccgtttgctacaacgaagagataatgtag 5578482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 5599839 - 5599798
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  5599839 aaactccgtttgctacaacgaagagataatgtagcctatgag 5599798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 5599905 - 5599864
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  5599905 aaactccgtttgctacaacgaagagataatgtagcctatgag 5599864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 5909116 - 5909075
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  5909116 aaactccgtttgctacaacgaagagataatgtagcctatgag 5909075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 5909178 - 5909141
Alignment:
Q  259 tctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  5909178 tctgtttgctacaacgaagagataatgtagcctatgag 5909141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 6735431 - 6735476
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataa 283  Q
    |||||||||||||||||||||  |||||  ||||||||||||||||    
T  6735431 catagtaacaaatgcaaaaacattgtttactacaacgaagagataa 6735476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 13702669 - 13702628
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  13702669 aaactccgtttgctacaacgaagagataatgtagcctatgag 13702628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 13713296 - 13713255
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||||||| ||| ||||||||||||||||| |||||||    
T  13713296 aaactctgtttgctacgacgaagagataatgtagcctatgag 13713255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 13713431 - 13713383
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatgagatatg 301  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||| ||||    
T  13713431 aaaaactccgtttgctacaacgaagagataatgtatcctatgaggtatg 13713383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 31663229 - 31663281
Alignment:
Q  244 aacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||||||||| || ||||| ||||| ||| ||||||||||| |||||||    
T  31663229 aacaaatgcaaaaaatccgtttgctacaatgaatagataatgtagcctatgag 31663281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 3634 - 3576
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||||||| |||| |||||||||||||||||||||| |||||||    
T  3634 catagtaacaaatgtgaaaactccgtttattacaacgaagagataatgtagcctatgag 3576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 3701 - 3643
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  |||||| |||||| ||||||||||||||||||||| |||||||    
T  3701 catagtaacaaatgtgaaaactttgtttgctacaacgaagagataatgtagcctatgag 3643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 69747 - 69805
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  |||| |||||||| ||||||||||||||||||||| |||||||    
T  69747 catagtaacaaatgacaaaaatctgtttgctacaacgaagagataatgtagcctatgag 69805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 69814 - 69871
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatga 295  Q
    ||||||||||||||  ||||||| ||||| ||||||||||||||||| ||| ||||||    
T  69814 catagtaacaaatgtgaaaactccgtttgctacaacgaagagataatatagcctatga 69871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 31346814 - 31346872
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||| |||||  ||||||||||||| ||||||||||||||||||||| |||||||    
T  31346814 catagtaaaaaatgtgaaaactctgtttgctacaacgaagagataatgtagcctatgag 31346872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 31315056 - 31314998
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||| |||||  ||||||| ||||| ||||||||||||||||||||| |||||||    
T  31315056 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatgag 31314998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 31315107 - 31315065
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  31315107 aaaactctgtttgctacaacgaagagataatgtagcctatgag 31315065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 31315177 - 31315135
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  31315177 aaaactctgtttgctacaacgaagagataatgtagcctatgag 31315135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 31346934 - 31346988
Alignment:
Q  239 atagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctat 293  Q
    |||||||||||||  ||||||| ||||| ||||||||||||||||||||| ||||    
T  31346934 atagtaacaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctat 31346988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 31347000 - 31347066
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 304  Q
    |||||||| |||||  ||||||| ||||| |||||||||||||||||||||  ||||||||| ||||    
T  31347000 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcatatgagatacggct 31347066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 31347067 - 31347125
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||| |||||  ||||||| ||||| ||||||||||||||||||||| |||||||    
T  31347067 catagtaaaaaatgtgaaaactccgtttgctacaacgaagagataatgtagcctatgag 31347125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 31315252 - 31315195
Alignment:
Q  247 aaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 304  Q
    |||||| |||| || ||||| ||||||||||||||||||||| ||||||| |||||||    
T  31315252 aaatgcgaaaaatccgtttgctacaacgaagagataatgtagcctatgaggtatggct 31315195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 2743383 - 2743424
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  2743383 aaactccgtttgctacaacgaagagataatgtagcctatgag 2743424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 2743449 - 2743490
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  2743449 aaactccgtttgctacaacgaagagataatgtagcctatgag 2743490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 2743515 - 2743556
Alignment:
Q  255 aaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  2743515 aaactccgtttgctacaacgaagagataatgtagcctatgag 2743556  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 11951282 - 11951319
Alignment:
Q  262 gtttgttacaacgaagagataatgtagtctatgagata 299  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  11951282 gtttgctacaacgaagagataatgtagcctatgagata 11951319  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 15088641 - 15088591
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtag 288  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  15088641 catagtaacaaatgcaaaaactccgtttgctaaaacgaagagataatgtag 15088591  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 22208038 - 22207980
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||| |||||| |||||||| |||||| |||||||||||||| |||||||    
T  22208038 catagtaacaaattcaaaaattctgtttgctacaaccaagagataatgtagcctatgag 22207980  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 22211249 - 22211199
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtag 288  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  22211249 catagtaacaaatgcaaaaactccgtttgctaaaacgaagagataatgtag 22211199  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 14114823 - 14114858
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtag 288  Q
    |||||||||||||| |||||||||||||||||||||    
T  14114823 aaaaactctgtttgctacaacgaagagataatgtag 14114858  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 22207751 - 22207700
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatgagatatggct 304  Q
    |||||||  ||||| ||||||||||||||||||||| |||||||||| ||||    
T  22207751 aaaaacttcgtttgctacaacgaagagataatgtagcctatgagatacggct 22207700  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 22207699 - 22207649
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtag 288  Q
    |||||||| |||||  |||| || |||||||||||||||||||||||||||    
T  22207699 catagtaataaatgtgaaaattccgtttgttacaacgaagagataatgtag 22207649  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 22207819 - 22207777
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||    
T  22207819 aaaactccgtttgctacaacgaagagataatgtagcctatgag 22207777  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 51844422 - 51844364
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||| ||||| ||| ||| ||||| |||| |||||||||||||||| |||||||    
T  51844422 catagtaacgaatgcgaaatctccgtttgctacagcgaagagataatgtagcctatgag 51844364  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 14114754 - 14114794
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctat 293  Q
    |||||||| ||||| ||||||||||||||||||||| ||||    
T  14114754 aaaaactccgtttgctacaacgaagagataatgtagcctat 14114794  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 39927 - 39974
Alignment:
Q  254 aaaactctgtttgttacaacgaagagataatgtagtctatgagatatg 301  Q
    |||| |||||||| ||||||||||||||||||||| ||||||| ||||    
T  39927 aaaattctgtttgctacaacgaagagataatgtagcctatgaggtatg 39974  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 41528698 - 41528655
Alignment:
Q  253 aaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||    
T  41528698 aaaaactccgtttgctacaacgaagagataatgtagcctatgag 41528655  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 41528514 - 41528457
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  41528514 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 41528457  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 41528580 - 41528523
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  41528580 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 41528523  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 41528646 - 41528589
Alignment:
Q  238 catagtaacaaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||||||||||||  ||| ||| ||||| ||||||||||||||||||||| |||||||    
T  41528646 catagtaacaaatgtgaaa-ctccgtttgctacaacgaagagataatgtagcctatgag 41528589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 37368910 - 37368959
Alignment:
Q  247 aaatgcaaaaactctgtttgttacaacgaagagataatgtagtctatgag 296  Q
    ||||| ||||| || ||||| ||||||||||||||||||||| |||||||    
T  37368910 aaatgtaaaaaatccgtttgctacaacgaagagataatgtagcctatgag 37368959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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