View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3816_low_3 (Length: 367)

Name: NF3816_low_3
Description: NF3816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3816_low_3
NF3816_low_3
[»] chr2 (5 HSPs)
chr2 (1-350)||(29865701-29866058)
chr2 (13-161)||(13510909-13511054)
chr2 (13-143)||(6606417-6606545)
chr2 (47-151)||(31842141-31842241)
chr2 (178-229)||(41079460-41079511)
[»] chr8 (12 HSPs)
chr8 (1-161)||(33949250-33949409)
chr8 (1-158)||(30412979-30413135)
chr8 (15-161)||(24579781-24579924)
chr8 (32-164)||(33384778-33384909)
chr8 (13-65)||(3462691-3462743)
chr8 (178-233)||(7691357-7691412)
chr8 (178-233)||(20279608-20279663)
chr8 (178-233)||(21066235-21066290)
chr8 (89-146)||(3461631-3461688)
chr8 (13-62)||(4758474-4758523)
chr8 (105-146)||(16878620-16878661)
chr8 (177-233)||(11041064-11041120)
[»] chr4 (10 HSPs)
chr4 (1-163)||(49535601-49535760)
chr4 (1-161)||(13136668-13136827)
chr4 (174-251)||(51736699-51736776)
chr4 (27-158)||(19146070-19146201)
chr4 (187-233)||(16822317-16822363)
chr4 (178-233)||(50343889-50343944)
chr4 (193-257)||(36721615-36721680)
chr4 (181-217)||(4850631-4850667)
chr4 (180-228)||(27392393-27392441)
chr4 (180-232)||(41317207-41317259)
[»] scaffold0338 (1 HSPs)
scaffold0338 (16-146)||(18163-18292)
[»] chr5 (6 HSPs)
chr5 (13-161)||(43585283-43585428)
chr5 (13-136)||(17095399-17095523)
chr5 (17-78)||(10237005-10237066)
chr5 (14-70)||(3955970-3956026)
chr5 (178-233)||(2816176-2816231)
chr5 (181-233)||(12448672-12448724)
[»] chr3 (7 HSPs)
chr3 (1-151)||(16142771-16142924)
chr3 (1-163)||(33440456-33440617)
chr3 (1-151)||(47042813-47042963)
chr3 (1-133)||(21795600-21795734)
chr3 (97-156)||(9245233-9245292)
chr3 (17-66)||(43899056-43899105)
chr3 (177-233)||(16731032-16731088)
[»] chr6 (5 HSPs)
chr6 (1-133)||(12338322-12338453)
chr6 (32-120)||(15494458-15494546)
chr6 (40-146)||(13278507-13278617)
chr6 (1-77)||(13278646-13278722)
chr6 (178-207)||(30038867-30038896)
[»] chr1 (8 HSPs)
chr1 (13-157)||(9862110-9862253)
chr1 (180-233)||(46917857-46917910)
chr1 (13-78)||(51879206-51879271)
chr1 (178-229)||(33744192-33744243)
chr1 (168-233)||(25095597-25095662)
chr1 (180-233)||(44442250-44442303)
chr1 (181-225)||(6285847-6285891)
chr1 (177-229)||(14774099-14774151)
[»] chr7 (6 HSPs)
chr7 (86-152)||(47024822-47024888)
chr7 (58-146)||(36791136-36791229)
chr7 (177-233)||(37352464-37352520)
chr7 (107-152)||(18689380-18689425)
chr7 (192-233)||(31902802-31902843)
chr7 (178-233)||(41431143-41431199)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 29866058 - 29865701
Alignment:
Q  1 tttaaggtctccaatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgctttt-aataagtattgtgttatttttcttttt 99  Q
    |||||||||||||||| ||||||||||||  |||| |||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29866058 tttaaggtctccaatctttttggtcttaaaatcaagtcctcgattcaataaaatttaatttattatgctttttaataagtattgtgttatttttcttttt 29865959  T
Q  100 aattccaaaaggcctcattattaaatttgttttagacctcttgacatattggaccggccctgcaaatgtccatgactttctttaagaattttaaaataag 199  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  29865958 aattccaaaaggtctcattattaaatttgttttaggcctcttgacatattgaatcggccctgcaagtgtccatgactttctttaaggattctaaaataag 29865859  T
Q  200 aaattattcctttaaaaaatcaaatatttcaattcacactaaattgattatacaaattaaggtcaaatcaaatacat-------atctttaaatttaatt 292  Q
    ||||||||| |||||||| || ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||       ||||||||||||||||    
T  29865858 aaattattcttttaaaaagtcgaatatttcaattcacagaaaattgattatacaaattaaggtcaaattaaatacatgacacacatctttaaatttaatt 29865759  T
Q  293 ttgcatcacaatggtcatttacatttttcaacattgaattggtcttttaactcatcca 350  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29865758 ttgtatcacaatggtcatatacatttttcaacattgaattggtcttttaactcatcca 29865701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 13511054 - 13510909
Alignment:
Q  13 aatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttctttttaattccaaaaggc 112  Q
    |||||||||||||||||| ||||||  || |||||| | || || ||||||||||||||||||||| ||||||||||||   |||||||||||||||| |    
T  13511054 aatccttttggtcttaagttcaaatattgaattcaaaagaacttgatttattatgcttttaataagcattgtgttattt---tttttaattccaaaagac 13510958  T
Q  113 ctcattattaaatttgttttagacctcttgacatattggaccggccctg 161  Q
    || || || ||||||| ||||| ||||||||||| ||||  ||||||||    
T  13510957 ctaatcataaaatttgctttaggcctcttgacatgttgggtcggccctg 13510909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 6606417 - 6606545
Alignment:
Q  13 aatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttctttttaattccaaaaggc 112  Q
    |||||||||||||||||| ||||||  || |||||| | || || ||||||||||||||||| ||| |||||||||||||  ||||||||||||||||      
T  6606417 aatccttttggtcttaagttcaaatattgaattcaaaagaacttgatttattatgcttttaacaagcattgtgttatttt--tttttaattccaaaagat 6606514  T
Q  113 ctcattattaaatttgttttagacctcttga 143  Q
    || ||||| ||||||| ||||| ||||||||    
T  6606515 ctaattataaaatttgctttaggcctcttga 6606545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 31842241 - 31842141
Alignment:
Q  47 aacaaaatttaatttattatgcttttaataagtattgtgttatttttctttttaattccaaaaggcctcattattaaatttgttttagacctcttgacat 146  Q
    ||||||| || |||||||||  |||||||||| ||||||| ||||||    ||||||||||||  |||| |||| |||||||| |||| |||||||||||    
T  31842241 aacaaaacttgatttattatagttttaataagcattgtgtaattttt----ttaattccaaaaaacctcgttataaaatttgtattaggcctcttgacat 31842146  T
Q  147 attgg 151  Q
    |||||    
T  31842145 attgg 31842141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 41079460 - 41079511
Alignment:
Q  178 tctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttc 229  Q
    ||||||||||||| |||||||||||||||||||| ||||| | |||||||||    
T  41079460 tctttaagaatttcaaaataagaaattattccttaaaaaagttaaatatttc 41079511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 33949250 - 33949409
Alignment:
Q  1 tttaaggtctccaatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttcttttta 100  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33949250 tttaaggcctccaatccttttggtcttaag-tcaaattctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttcttttaa 33949348  T
Q  101 attccaaaaggcctcattattaaatttgttttagacctcttgacatattggaccggccctg 161  Q
    ||| ||||||||||||||||||||||||||||||  ||||||||||| ||| || ||||||    
T  33949349 atttcaaaaggcctcattattaaatttgttttaggtctcttgacataatgggcctgccctg 33949409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 30412979 - 30413135
Alignment:
Q  1 tttaaggtctccaatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttcttttta 100  Q
    |||||| |||| ||||||||| ||| |||||||||||  ||||||||||||||||| ||||||||||||||| ||||| ||||| || ||||| ||||||    
T  30412979 tttaagctctcaaatccttttagtcctaaggtcaaattttggattcaacaaaatttgatttattatgctttttataagcattgt-tttttttttttttta 30413077  T
Q  101 attccaaaaggcctcattattaaatttgttttagacctcttgacatattggaccggcc 158  Q
    ||| ||||| |||||||||| ||||||| ||||||  | ||||||| ||||| |||||    
T  30413078 atttcaaaaagcctcattataaaatttgctttagaatttttgacatgttggatcggcc 30413135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 24579924 - 24579781
Alignment:
Q  15 tccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttctttttaattccaaaaggcct 114  Q
    |||||||||||||||| | ||||  || |||||| | || || ||||||||||||||||||||| ||||||||| ||   |||||||||||||||| |||    
T  24579924 tccttttggtcttaagtttaaatattgaattcaaaagaacttgatttattatgcttttaataagcattgtgttaatt---tttttaattccaaaagacct 24579828  T
Q  115 cattattaaatttgttttagacctcttgacatattggaccggccctg 161  Q
     ||||| ||||||| ||||  ||||||||||| ||||  ||||||||    
T  24579827 aattataaaatttgctttaagcctcttgacatgttgggtcggccctg 24579781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 164
Target Start/End: Original strand, 33384778 - 33384909
Alignment:
Q  32 tcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttctttttaattccaaaaggcctcattat--taaatttgt 129  Q
    ||||||| | ||||||||||| ||| ||||||||||||||||| ||| | ||||   ||||| |||||||||||||||||||||| |||   ||| |||     
T  33384778 tcaaatcttagattcaacaaattttgatttattatgcttttaacaagcactgtg---tttttttttttaattccaaaaggcctcaatataaaaaaattgc 33384874  T
Q  130 tttagacctcttgacatattggaccggccctgcaa 164  Q
    ||||| ||||| ||||| |||| ||||||||||||    
T  33384875 tttaggcctctcgacatgttgggccggccctgcaa 33384909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 3462743 - 3462691
Alignment:
Q  13 aatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttatta 65  Q
    ||||||||||||| |||| ||||||| |||||||||||||| || ||||||||    
T  3462743 aatccttttggtcctaagttcaaatcttggattcaacaaaacttgatttatta 3462691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 7691357 - 7691412
Alignment:
Q  178 tctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    |||||||| ||||||||| ||||||||||||| |  |||||| |||||||||||||    
T  7691357 tctttaagcattttaaaagaagaaattattccatacaaaaattaaatatttcaatt 7691412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 20279663 - 20279608
Alignment:
Q  178 tctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    |||||||| ||| ||||||||| |||||||| || ||||| |||||||||||||||    
T  20279663 tctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaatt 20279608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 21066290 - 21066235
Alignment:
Q  178 tctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    |||||||| ||| ||||||||| |||||||| || ||||| |||||||||||||||    
T  21066290 tctttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaatt 21066235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 3461688 - 3461631
Alignment:
Q  89 tttttctttttaattccaaaaggcctcattattaaatttgttttagacctcttgacat 146  Q
    ||||| |||||||||| |||| | ||| |||| ||||||||||||| |||||||||||    
T  3461688 tttttttttttaattctaaaatgtctctttataaaatttgttttaggcctcttgacat 3461631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 4758523 - 4758474
Alignment:
Q  13 aatccttttggtcttaaggtcaaatcctggattcaacaaaatttaattta 62  Q
    ||||||||||||  |||||| ||||| ||||||||| |||||||||||||    
T  4758523 aatccttttggttctaaggttaaatcttggattcaataaaatttaattta 4758474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 16878620 - 16878661
Alignment:
Q  105 caaaaggcctcattattaaatttgttttagacctcttgacat 146  Q
    ||||| |||||||||| ||||||||||||| |||||||||||    
T  16878620 caaaatgcctcattataaaatttgttttaggcctcttgacat 16878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 11041064 - 11041120
Alignment:
Q  177 ttctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    ||||||||| |||||||||| |||||| ||||| | ||||| | |||||||||||||    
T  11041064 ttctttaagcattttaaaatgagaaatcattccataaaaaagttaaatatttcaatt 11041120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 49535760 - 49535601
Alignment:
Q  1 tttaaggtctccaatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttcttttta 100  Q
    ||||||| ||| ||||||||||||| |||| ||||||  |||||||||||||| || ||||||||||||||||||||  ||||||||||||   ||||||    
T  49535760 tttaaggcctcaaatccttttggtcctaagttcaaattttggattcaacaaaacttgatttattatgcttttaataaacattgtgttattt---ttttta 49535664  T
Q  101 attccaaaaggcctcattattaaatttgttttagacctcttgacatattggaccggccctgca 163  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||| || | |||||||||||    
T  49535663 attccaaaagacctcgttataaaatttgttttagacctcttgacatgttaggccggccctgca 49535601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 13136668 - 13136827
Alignment:
Q  1 tttaaggtctccaatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttcttttta 100  Q
    ||||||| ||| ||||||||| |||||||| ||||||  || |||||| | || || |||| |||||||||||||||| |||||||||||||| ||||||    
T  13136668 tttaaggcctcaaatccttttagtcttaagttcaaatattgaattcaaaagaacttgatttcttatgcttttaataagcattgtgttattttt-ttttta 13136766  T
Q  101 attccaaaaggcctcattattaaatttgttttagacctcttgacatattggaccggccctg 161  Q
    |||||||| | ||| ||||| || |||| |||||  ||| |||||| |||| ||| |||||    
T  13136767 attccaaatgacctaattataaattttgctttaggtctcatgacatgttgggccgaccctg 13136827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 51736699 - 51736776
Alignment:
Q  174 actttctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaattcacactaaattgattata 251  Q
    |||||||||||||||||| |||||||||||||||   ||||||| | |||||||||||||| || |||||| ||||||    
T  51736699 actttctttaagaatttttaaataagaaattattttattaaaaagttaaatatttcaattctcattaaattaattata 51736776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 19146070 - 19146201
Alignment:
Q  27 taaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttctttttaattccaaaaggcctcattattaaatt 126  Q
    |||| ||||||| || ||||| ||||| ||||||||||||||||||||||||  |||| || ||||| | | ||||||| |||  | || |||| |||||    
T  19146070 taagttcaaatcttgaattcagcaaaacttaatttattatgcttttaataagcgttgttttttttttttatataattccgaaaaacttctttataaaatt 19146169  T
Q  127 tgttttagacctcttgacatattggaccggcc 158  Q
    | ||||| |||| |||| || || ||||||||    
T  19146170 tattttaaaccttttgatatgttagaccggcc 19146201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 16822363 - 16822317
Alignment:
Q  187 attttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||    
T  16822363 attttaaaataagcaattatttttttaaaaaatcaaatatttcaatt 16822317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 50343944 - 50343889
Alignment:
Q  178 tctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    |||||||| ||||||||||||| |||||||| || ||||| |||||||||| ||||    
T  50343944 tctttaagcattttaaaataagtaattattctttaaaaaagtcaaatattttaatt 50343889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 36721680 - 36721615
Alignment:
Q  193 aaataagaaattattcctttaaaaaa-tcaaatatttcaattcacactaaattgattatacaaatt 257  Q
    ||||||||| ||||||||| |||||| |||||||||||||||| || |  |||||||| |||||||    
T  36721680 aaataagaagttattccttaaaaaaagtcaaatatttcaattctcaatgcattgattacacaaatt 36721615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 4850631 - 4850667
Alignment:
Q  181 ttaagaattttaaaataagaaattattcctttaaaaa 217  Q
    |||||||||||||| |||||||||||||||| |||||    
T  4850631 ttaagaattttaaattaagaaattattccttaaaaaa 4850667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 27392393 - 27392441
Alignment:
Q  180 tttaagaattttaaaataagaaattattcctttaaaaaatcaaatattt 228  Q
    |||||| |||| ||| |||||||||||| ||||||||| ||||||||||    
T  27392393 tttaagtatttaaaattaagaaattatttctttaaaaattcaaatattt 27392441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 41317207 - 41317259
Alignment:
Q  180 tttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaat 232  Q
    |||||| ||| |||| ||| |||||||||||| |||||||||||||| |||||    
T  41317207 tttaaggattctaaattaaaaaattattccttaaaaaaatcaaatatgtcaat 41317259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 18292 - 18163
Alignment:
Q  16 ccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttctttttaattccaaaaggcctc 115  Q
    |||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||| ||| ||||||| |||    
T  18292 ccttttggtcctaagttcaaatcttggattcaacaaaatttgatttattatgcttttagtaagcattgtgttatttttattttt-atttcaaaaggtctc 18194  T
Q  116 attattaaatttgttttagacctcttgacat 146  Q
    ||||| ||||||||||||| |||||||||||    
T  18193 attataaaatttgttttaggcctcttgacat 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 43585428 - 43585283
Alignment:
Q  13 aatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttctttttaattccaaaaggc 112  Q
    |||||||||||||||||| ||||||  || |||||| | || || ||||||||||||||||||||| ||||||||||||   |||||||||||||||| |    
T  43585428 aatccttttggtcttaagttcaaattttgaattcaaaagaacttgatttattatgcttttaataagcattgtgttattt---tttttaattccaaaagac 43585332  T
Q  113 ctcattattaaatttgttttagacctcttgacatattggaccggccctg 161  Q
    || ||||| ||||||||||||| ||||||||||| ||||  ||||||||    
T  43585331 ctaattataaaatttgttttaggcctcttgacatgttgggtcggccctg 43585283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 17095523 - 17095399
Alignment:
Q  13 aatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtg-ttatttttctttttaattccaaaagg 111  Q
    ||||||||||||| |||| ||||||| | |||||||||||| || ||||||||||||||||||||  ||| || || ||||| ||||| ||| ||||||     
T  17095523 aatccttttggtcctaagttcaaatcttagattcaacaaaacttgatttattatgcttttaataaacattttgatttttttttttttttatttcaaaaga 17095424  T
Q  112 cctcattattaaatttgttttagac 136  Q
    ||||||||| |||||||||||||||    
T  17095423 cctcattataaaatttgttttagac 17095399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 10237066 - 10237005
Alignment:
Q  17 cttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataag 78  Q
    ||||||| || ||| ||||||| | ||||||||||||||| |||||||||||||||||||||    
T  10237066 cttttggactaaagttcaaatcttagattcaacaaaatttgatttattatgcttttaataag 10237005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 3956026 - 3955970
Alignment:
Q  14 atccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgctt 70  Q
    |||||||||||| |||  ||||||| |||||||||||||| || |||||||||||||    
T  3956026 atccttttggtcctaacttcaaatcttggattcaacaaaaattgatttattatgctt 3955970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 2816176 - 2816231
Alignment:
Q  178 tctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    |||||||| |||| |||| ||| |||||||| || |||||||||||||||||||||    
T  2816176 tctttaagcatttcaaaagaagcaattattctttaaaaaaatcaaatatttcaatt 2816231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 12448672 - 12448724
Alignment:
Q  181 ttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    ||||| ||||||||||||||||||||||  | ||||| | |||||||||||||    
T  12448672 ttaaggattttaaaataagaaattattcaataaaaaagttaaatatttcaatt 12448724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 16142924 - 16142771
Alignment:
Q  1 tttaaggtctccaatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttcttt--- 97  Q
    ||||||| ||| |||||||||  || |||| ||||||| |||||||||||||| || |||||||||||||||| |||| ||||||||||||||||||       
T  16142924 tttaaggcctcgaatccttttaatcgtaagttcaaatcttggattcaacaaaacttgatttattatgcttttactaagcattgtgttatttttcttttaa 16142825  T
Q  98 ttaattccaaaaggcctcattattaaatttgttttagacctcttgacatattgg 151  Q
    ||||||| |||| |||||||||| |||||| |||||   |||||||||| ||||    
T  16142824 ttaattctaaaaagcctcattataaaatttattttacgtctcttgacatgttgg 16142771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 33440617 - 33440456
Alignment:
Q  1 tttaaggtctccaatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttcttttta 100  Q
    ||||||| ||| ||||||||||||  |||| ||||||| || ||| |||||||  | ||||||||||||||||||||| | ||||  |||||| | |||     
T  33440617 tttaaggcctcaaatccttttggttctaagttcaaatcttgaatttaacaaaacgtgatttattatgcttttaataagcactgtgcaattttt-tatttt 33440519  T
Q  101 attccaaaaggcctcattattaaatttgttttagacctcttgacatattggaccggccctgca 163  Q
    |||  |||||| |||||||| ||||||| ||||| ||||||||||| || | |||||||||||    
T  33440518 attttaaaaggtctcattataaaatttgctttaggcctcttgacatgtttggccggccctgca 33440456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 47042813 - 47042963
Alignment:
Q  1 tttaaggtctccaatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttctt-ttt 99  Q
    ||||||||||| |||| ||||||||||||| |||||| ||  ||||||||||| |  |||||| |||||||||||||  ||||| |||||||| ||        
T  47042813 tttaaggtctcaaatcattttggtcttaagttcaaat-cttaattcaacaaaactcgatttatcatgcttttaataaacattgtattattttttttaaaa 47042911  T
Q  100 aattccaaaaggcctcattattaaatttgttttagacctcttgacatattgg 151  Q
    |||| ||||||  |||||||| |||||| ||||||||||||| |||||||||    
T  47042912 aatttcaaaagctctcattataaaatttattttagacctcttaacatattgg 47042963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 21795600 - 21795734
Alignment:
Q  1 tttaaggtctccaatccttttggtcttaaggtcaaat---cctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttcttt 97  Q
    ||||||||||  |||| | ||||||||||| ||||||   | |||||||||||||| | |||| ||||| ||||||||||  ||| |||||||||| |||    
T  21795600 tttaaggtcttaaatcatattggtcttaagttcaaataatcttggattcaacaaaactcaattgattatacttttaataaacattttgttattttt-ttt 21795698  T
Q  98 ttaattccaaaaggcctcattattaaatttgtttta 133  Q
    |||||||||||||  ||| |||| ||||||||||||    
T  21795699 ttaattccaaaagctctccttataaaatttgtttta 21795734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 9245292 - 9245233
Alignment:
Q  97 tttaattccaaaaggcctcattattaaatttgttttagacctcttgacatattggaccgg 156  Q
    ||||||||||||| || ||||||| |||||||||||| ||||||||| || |||| ||||    
T  9245292 tttaattccaaaacgcttcattataaaatttgttttaaacctcttgatatgttgggccgg 9245233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 43899056 - 43899105
Alignment:
Q  17 cttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattat 66  Q
    |||||||||||||| ||||||| | |||||||||||| || |||||||||    
T  43899056 cttttggtcttaagttcaaatctttgattcaacaaaacttgatttattat 43899105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 16731032 - 16731088
Alignment:
Q  177 ttctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    ||||||||  |||||| | |||||||||||| ||| ||||| |||||||||||||||    
T  16731032 ttctttaaagattttatattaagaaattatttcttaaaaaattcaaatatttcaatt 16731088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 12338322 - 12338453
Alignment:
Q  1 tttaaggtctccaatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttcttttta 100  Q
    ||||||| ||| |||||||| |||| |||| ||||||| ||||||||| |||| || |||||||||||| ||||||||||||||||||||||| ||| ||    
T  12338322 tttaaggcctcaaatcctttcggtcctaagttcaaatcatggattcaataaaactttatttattatgctattaataagtattgtgttattttt-tttata 12338420  T
Q  101 attccaaaaggcctcattattaaatttgtttta 133  Q
    |||||||||| | | ||||| ||||||| ||||    
T  12338421 attccaaaagacgttattataaaatttgattta 12338453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 15494458 - 15494546
Alignment:
Q  32 tcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttctttttaattccaaaaggcctcattat 120  Q
    ||||||| | |||||||||||||||||||||||||| |||||||||| | |||||||||||| |||| ||||||||||||| |||||||    
T  15494458 tcaaatcttagattcaacaaaatttaatttattatgtttttaataagcaatgtgttattttttttttcaattccaaaaggcttcattat 15494546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 13278617 - 13278507
Alignment:
Q  40 tggattcaacaaaatttaatttattatgcttttaataagtattgtg--ttatttttctttttaattccaaaaggcctcattattaaatttgttttaga-- 135  Q
    |||||| ||||||| || |||||| |||||||||||||| ||||||  || ||||| |||||||||  |||| |||||||||| ||||||| ||||||      
T  13278617 tggattaaacaaaacttgatttataatgcttttaataagcattgtgttttttttttttttttaattttaaaaagcctcattataaaatttgctttagagg 13278518  T
Q  136 cctcttgacat 146  Q
    |||||||||||    
T  13278517 cctcttgacat 13278507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13278722 - 13278646
Alignment:
Q  1 tttaaggtctccaatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataa 77  Q
    ||||||| ||| ||||||||||||| |||| | ||||| ||| |||||||||| || |||||||||| |||| ||||    
T  13278722 tttaaggcctcaaatccttttggtcctaagtttaaatcttgggttcaacaaaacttgatttattatgtttttgataa 13278646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 30038867 - 30038896
Alignment:
Q  178 tctttaagaattttaaaataagaaattatt 207  Q
    ||||||||||||||||||||||||||||||    
T  30038867 tctttaagaattttaaaataagaaattatt 30038896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 9862110 - 9862253
Alignment:
Q  13 aatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataagtattgtgttatttttctttttaattccaaaaggc 112  Q
    ||||||||||||  |||| ||||||| ||||||||| |||| || |||||||||||||||| |||| ||||  || |||||| ||| |||||||||||||    
T  9862110 aatccttttggttctaagttcaaatcttggattcaaaaaaacttgatttattatgcttttactaagcattgcattttttttc-tttaaattccaaaaggc 9862208  T
Q  113 ctcattattaaatttgttttagacctcttgacatattggaccggc 157  Q
     ||||||| ||||||| ||||  ||||||||||| |||| |||||    
T  9862209 ttcattataaaatttgctttaagcctcttgacatgttgggccggc 9862253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 46917857 - 46917910
Alignment:
Q  180 tttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    ||||||||||||||||||| |||||||| ||| ||||||| |||||||| ||||    
T  46917857 tttaagaattttaaaataaaaaattatttcttaaaaaaattaaatattttaatt 46917910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 51879206 - 51879271
Alignment:
Q  13 aatccttttggtcttaaggtcaaatcctggattcaacaaaatttaatttattatgcttttaataag 78  Q
    |||||||||||||||||| ||||||  || |||||| | || || |||||||||||||||||||||    
T  51879206 aatccttttggtcttaagttcaaatattgaattcaaaagaacttgatttattatgcttttaataag 51879271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 33744243 - 33744192
Alignment:
Q  178 tctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttc 229  Q
    |||||||| ||||||||||||| |||||||  |||||||| |||||||||||    
T  33744243 tctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttc 33744192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 25095597 - 25095662
Alignment:
Q  168 tccatgactttctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    ||||||||  |||||||| ||| ||||| ||||||||||| | | ||||| |||||||||||||||    
T  25095597 tccatgacactctttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaatt 25095662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 44442250 - 44442303
Alignment:
Q  180 tttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    |||||| |||||||| || |||||||||| || ||||| |||||||||||||||    
T  44442250 tttaagtattttaaattaggaaattattctttaaaaaagtcaaatatttcaatt 44442303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 6285847 - 6285891
Alignment:
Q  181 ttaagaattttaaaataagaaattattcctttaaaaaatcaaata 225  Q
    ||||| |||||||||||||||||||||| || ||||| |||||||    
T  6285847 ttaaggattttaaaataagaaattattctttaaaaaagtcaaata 6285891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 14774099 - 14774151
Alignment:
Q  177 ttctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttc 229  Q
    ||||||||| ||| ||||||||  |||||||  ||||||||||||||||||||    
T  14774099 ttctttaagcattctaaaataatcaattatttgtttaaaaaatcaaatatttc 14774151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 47024888 - 47024822
Alignment:
Q  86 ttatttttctttttaattccaaaaggcctcattattaaatttgttttagacctcttgacatattgga 152  Q
    |||||||| ||||| ||||| |||| ||||||||| |||||| |||||||||||||||||| |||||    
T  47024888 ttatttttattttttattccgaaagacctcattataaaatttattttagacctcttgacatgttgga 47024822  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 36791229 - 36791136
Alignment:
Q  58 atttattatgcttttaataagtattgtgttatttttcttttt-----aattccaaaaggcctcattattaaatttgttttagacctcttgacat 146  Q
    ||||||| ||||||||||||  | |||||||||||| |||||     |||| |||||| ||||||||| ||||||||||||| |||||||||||    
T  36791229 atttattgtgcttttaataaacaatgtgttatttttttttttttttaaatttcaaaagacctcattataaaatttgttttaggcctcttgacat 36791136  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 37352520 - 37352464
Alignment:
Q  177 ttctttaagaattttaaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    ||||||||| |||  |||| ||||||||||||| ||||||| |||||||||||||||    
T  37352520 ttctttaaggattcaaaaacaagaaattattccattaaaaagtcaaatatttcaatt 37352464  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 18689380 - 18689425
Alignment:
Q  107 aaaggcctcattattaaatttgttttagacctcttgacatattgga 152  Q
    |||||||||||||| ||||||||||||| |||||| |||| |||||    
T  18689380 aaaggcctcattataaaatttgttttaggcctcttaacatgttgga 18689425  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 31902843 - 31902802
Alignment:
Q  192 aaaataagaaattattcctttaaaaaatcaaatatttcaatt 233  Q
    |||||||||||||||||||| | ||| |||||||||||||||    
T  31902843 aaaataagaaattattccttaagaaagtcaaatatttcaatt 31902802  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 41431199 - 41431143
Alignment:
Q  178 tctttaagaattttaaaataagaaattattccttt-aaaaaatcaaatatttcaatt 233  Q
    |||||||| |||||||| ||||||||||||  ||| ||||||| |||||||||||||    
T  41431199 tctttaagcattttaaattaagaaattatttttttaaaaaaattaaatatttcaatt 41431143  T

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