View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3816_low_5 (Length: 321)

Name: NF3816_low_5
Description: NF3816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3816_low_5
NF3816_low_5
[»] chr2 (7 HSPs)
chr2 (6-302)||(29866230-29866525)
chr2 (196-317)||(6606255-6606376)
chr2 (35-95)||(5313929-5313989)
chr2 (196-317)||(13511095-13511216)
chr2 (43-96)||(17484937-17484990)
chr2 (34-94)||(7271818-7271878)
chr2 (265-317)||(31842341-31842393)
[»] chr3 (11 HSPs)
chr3 (194-308)||(21795448-21795563)
chr3 (34-98)||(31901815-31901879)
chr3 (197-256)||(47042663-47042722)
chr3 (37-106)||(25958464-25958533)
chr3 (265-305)||(3970950-3970990)
chr3 (265-305)||(3998891-3998931)
chr3 (39-93)||(31681163-31681217)
chr3 (39-93)||(31917477-31917531)
chr3 (37-107)||(38457212-38457282)
chr3 (37-94)||(1557743-1557800)
chr3 (268-317)||(33440646-33440695)
[»] chr8 (11 HSPs)
chr8 (203-317)||(30412836-30412950)
chr8 (270-317)||(4758568-4758615)
chr8 (203-302)||(16872259-16872358)
chr8 (37-99)||(22209447-22209509)
chr8 (196-314)||(33384597-33384715)
chr8 (204-317)||(24579967-24580080)
chr8 (196-256)||(12520549-12520609)
chr8 (37-88)||(26462014-26462065)
chr8 (199-317)||(3462784-3462905)
chr8 (191-255)||(23273823-23273887)
chr8 (270-314)||(44541843-44541887)
[»] chr1 (3 HSPs)
chr1 (203-317)||(51879051-51879165)
chr1 (34-83)||(17112744-17112793)
chr1 (268-309)||(9862020-9862061)
[»] scaffold0338 (1 HSPs)
scaffold0338 (208-317)||(18336-18445)
[»] chr4 (6 HSPs)
chr4 (35-105)||(2137225-2137295)
chr4 (203-317)||(13136525-13136639)
chr4 (265-317)||(49535788-49535840)
chr4 (207-317)||(19145910-19146019)
chr4 (35-105)||(50086405-50086475)
chr4 (20-106)||(50774985-50775071)
[»] chr5 (5 HSPs)
chr5 (195-317)||(17095564-17095686)
chr5 (208-317)||(3956070-3956178)
chr5 (37-92)||(39568337-39568392)
chr5 (203-240)||(43585693-43585730)
chr5 (39-99)||(2270319-2270379)
[»] chr7 (4 HSPs)
chr7 (34-98)||(3256631-3256695)
chr7 (37-105)||(35874678-35874746)
chr7 (18-105)||(40065780-40065867)
chr7 (280-317)||(47024996-47025033)
[»] chr6 (3 HSPs)
chr6 (196-256)||(15494243-15494303)
chr6 (203-305)||(13278763-13278865)
chr6 (289-317)||(15573922-15573950)
[»] scaffold0009 (1 HSPs)
scaffold0009 (20-98)||(189093-189171)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 302
Target Start/End: Complemental strand, 29866525 - 29866230
Alignment:
Q  6 aggagcagagagagtattctctaaaacggtcaaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggttcataaa 105  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29866525 aggaccagagagagtcttctctaaaacagtcaaatattttgattttaaatatattgaatacatacattttcataaatacttatcatttatggttcataaa 29866426  T
Q  106 agtgcgccaaagacactcgttagtatttctcatactattattattaataaagtatgttggttttaatattagatcttgctaacgagtgtccagggctggc 205  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  29866425 agtgtgtcaaagacactcgttagtatttctcatactattattattaataaagtatgttggttttaatattagatcttgctaacgagtgtctagggctgac 29866326  T
Q  206 ctaagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagtatataata 302  Q
    |||| |||||||||| |||| ||| || ||||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  29866325 ctaaaggccaagccacccaagcaa-ggttttaggcctctagattttgggttaaaaaaaggcttcaaaataaatcaatttagctataagtatataata 29866230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 6606255 - 6606376
Alignment:
Q  196 cagggctggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagta 295  Q
    |||||| |||||||||||||||||| |||| |||||||||||||| || | ||||| ||||       |   ||||||||| ||||||||||||||| ||    
T  6606255 cagggccggcctaagggccaagccacccaagcaagggctttaggcctcaaaattttaggttaaataaagctctcaaaataagtcaatttagctataaata 6606354  T
Q  296 tataatatgacatattaataat 317  Q
    |||||||||||||| |||||||    
T  6606355 tataatatgacatactaataat 6606376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 5313989 - 5313929
Alignment:
Q  35 tcaaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttat 95  Q
    ||||||||||| ||||| |||||||||||||||| |||||| |||||||  ||||||||||    
T  5313989 tcaaatattttcatttccaatatattgaatacatctatttttataaatatctatcatttat 5313929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 317
Target Start/End: Complemental strand, 13511216 - 13511095
Alignment:
Q  196 cagggctggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagta 295  Q
    |||||| | |||||||| ||||||| |||| |||||||||||||| || | ||||| ||||       |   ||||||||| |||||||| |||||| ||    
T  13511216 cagggccgacctaagggtcaagccacccaagcaagggctttaggcctcaaaattttaggttaaaaaaagctctcaaaataagtcaatttaactataaata 13511117  T
Q  296 tataatatgacatattaataat 317  Q
    |||||||||||||| |||||||    
T  13511116 tataatatgacatactaataat 13511095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 17484990 - 17484937
Alignment:
Q  43 tttgatttcaaatatattgaatacatatattttcataaatacttatcatttatg 96  Q
    |||||||||||||||||| |||| | ||||||||||||||| |||||| |||||    
T  17484990 tttgatttcaaatatattaaatatacatattttcataaatatttatcacttatg 17484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 7271818 - 7271878
Alignment:
Q  34 gtcaaatattttgatttcaaatatattgaatacatatattttcataaatacttatcattta 94  Q
    |||||||||||| ||||| |||  ||||| |||||||||||||||||| | ||||||||||    
T  7271818 gtcaaatatttttatttccaatgcattgattacatatattttcataaaaagttatcattta 7271878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 31842393 - 31842341
Alignment:
Q  265 gcttcaaaataaatcaatttagctataagtatataatatgacatattaataat 317  Q
    |||| ||||||| ||||||||| ||||| ||| |||||||||||| |||||||    
T  31842393 gctttaaaataagtcaatttagttataaatatttaatatgacataataataat 31842341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 308
Target Start/End: Original strand, 21795448 - 21795563
Alignment:
Q  194 tccagggctggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggtt-nnnnnnnggcttcaaaataaatcaatttagctataa 292  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||        ||| ||||||||| || ||||| ||||||    
T  21795448 tccagggctggcctaagggccaagccatccaagcaagggctttaggcctcaagattttgggttaataaaaaggcctcaaaataagtctatttaactataa 21795547  T
Q  293 gtatataatatgacat 308  Q
     |||||||||||||||    
T  21795548 atatataatatgacat 21795563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 31901879 - 31901815
Alignment:
Q  34 gtcaaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggt 98  Q
    |||| ||||||||||||| |||||||||| |||||  |||||||||||||||||| |||||||||    
T  31901879 gtcatatattttgatttctaatatattgattacatgcattttcataaatacttattatttatggt 31901815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 47042663 - 47042722
Alignment:
Q  197 agggctggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggtt 256  Q
    ||||| |||||||||||||||||| |||||||| |||||||||| || ||||||||||||    
T  47042663 agggccggcctaagggccaagccacccaaacaatggctttaggcatcaagattttgggtt 47042722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 25958464 - 25958533
Alignment:
Q  37 aaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggttcataaaa 106  Q
    ||||||||||||||  ||||||||||  ||| | ||||| | |||||||||||||||||||||| |||||    
T  25958464 aaatattttgatttacaatatattgatcacacacatttttaaaaatacttatcatttatggttcttaaaa 25958533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 3970950 - 3970990
Alignment:
Q  265 gcttcaaaataaatcaatttagctataagtatataatatga 305  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  3970950 gctttaaaataagtcaatttagctataagtatataatatga 3970990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 3998931 - 3998891
Alignment:
Q  265 gcttcaaaataaatcaatttagctataagtatataatatga 305  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  3998931 gctttaaaataagtcaatttagctataagtatataatatga 3998891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 31681163 - 31681217
Alignment:
Q  39 atattttgatttcaaatatattgaatacatatattttcataaatacttatcattt 93  Q
    ||||||||||||| |||| ||||| |||||  |||||||||||||||||| ||||    
T  31681163 atattttgatttctaatacattgattacatgcattttcataaatacttattattt 31681217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 31917531 - 31917477
Alignment:
Q  39 atattttgatttcaaatatattgaatacatatattttcataaatacttatcattt 93  Q
    ||||||||||||| |||| ||||| |||||  |||||||||||||||||| ||||    
T  31917531 atattttgatttctaatacattgattacatgcattttcataaatacttattattt 31917477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 38457282 - 38457212
Alignment:
Q  37 aaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggttcataaaag 107  Q
    ||||||||||||||  |||  ||||| ||||| ||||||| ||||||||||  ||||||||||| ||||||    
T  38457282 aaatattttgattttcaatgcattgattacatgtattttcgtaaatacttactatttatggttcttaaaag 38457212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 1557800 - 1557743
Alignment:
Q  37 aaatattttgatttcaaatatattgaatacatatattttcataaatacttatcattta 94  Q
    ||||||||| ||||  |||||||||| |||||||||||| ||||| | ||||||||||    
T  1557800 aaatattttaatttttaatatattgattacatatatttttataaaaaattatcattta 1557743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 33440695 - 33440646
Alignment:
Q  268 tcaaaataaatcaatttagctataagtatataatatgacatattaataat 317  Q
    ||||||||| | ||||||||||||| ||| |||||||||||| |||||||    
T  33440695 tcaaaataagtaaatttagctataaatatttaatatgacatactaataat 33440646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 30412836 - 30412950
Alignment:
Q  203 ggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagtatataata 302  Q
    |||||||||| ||||| | ||||  |||||||||| || || ||||||| ||||       ||| ||||||||||||||||||| |||||||||||||||    
T  30412836 ggcctaagggtcaagcaacccaagaaagggctttatgcctcaagattttaggttaaaaaaaggcctcaaaataaatcaatttagatataagtatataata 30412935  T
Q  303 tgacatattaataat 317  Q
    |||||||||||||||    
T  30412936 tgacatattaataat 30412950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 4758615 - 4758568
Alignment:
Q  270 aaaataaatcaatttagctataagtatataatatgacatattaataat 317  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  4758615 aaaataaatcaatttagctataagtatataatgtgacatattaataat 4758568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 16872259 - 16872358
Alignment:
Q  203 ggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagtatataata 302  Q
    |||| ||||||||||||| || |||||||  ||||||| || ||||||||||||        |||||||||||||||||||||||||||| |||||||||    
T  16872259 ggcccaagggccaagccaccctaacaaggattttaggcctcaagattttgggttaaaaaagtgcttcaaaataaatcaatttagctataaatatataata 16872358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 22209447 - 22209509
Alignment:
Q  37 aaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggtt 99  Q
    ||||||||||||||| || | ||||| ||||||||||||||||||||||||  ||||||||||    
T  22209447 aaatattttgatttccaagacattgattacatatattttcataaatacttactatttatggtt 22209509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 33384597 - 33384715
Alignment:
Q  196 cagggctggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagta 295  Q
    |||||| |||||||||||||||||| | || |  ||| ||||||| || ||||||||| ||       ||| ||||||||| ||||||||| ||||| ||    
T  33384597 cagggccggcctaagggccaagccaccaaagcgggggttttaggcctcaagattttggattaaaaaaaggcctcaaaataagtcaatttagttataaata 33384696  T
Q  296 tataatatgacatattaat 314  Q
    |||||||||||||| ||||    
T  33384697 tataatatgacatactaat 33384715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 317
Target Start/End: Complemental strand, 24580080 - 24579967
Alignment:
Q  204 gcctaagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagtatataatat 303  Q
    ||||||||||||||||| |||| |||||||||||| | || | ||||| ||||       |   ||||||||| ||||||||||||||| ||||||||||    
T  24580080 gcctaagggccaagccacccaagcaagggctttagtcctcaaaattttaggttaaaaaaagctctcaaaataagtcaatttagctataaatatataatat 24579981  T
Q  304 gacatattaataat 317  Q
     ||||| |||||||    
T  24579980 tacatactaataat 24579967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 12520609 - 12520549
Alignment:
Q  196 cagggctggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggtt 256  Q
    |||||| |||||||||||||| ||| |||| |||||| ||||||| || ||||||||||||    
T  12520609 cagggccggcctaagggccaaaccacccaagcaagggttttaggcctcaagattttgggtt 12520549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 26462014 - 26462065
Alignment:
Q  37 aaatattttgatttcaaatatattgaatacatatattttcataaatacttat 88  Q
    ||||||||||||||  ||| ||||||| ||||||||||| ||||||||||||    
T  26462014 aaatattttgatttttaatgtattgaacacatatatttttataaatacttat 26462065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 317
Target Start/End: Complemental strand, 3462905 - 3462784
Alignment:
Q  199 ggctggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggt---tnnnnnnnggcttcaaaataaatcaatttagctataagta 295  Q
    |||||| |||||||  |||||||||||||||||| ||||| |||| ||||||| |||   |        |||| ||||||| ||||| ||||||||| ||    
T  3462905 ggctggtctaagggtgaagccatccaaacaagggttttagtcttcaagattttaggttagtaaaaaaatgctttaaaataagtcaatatagctataaata 3462806  T
Q  296 tataatatgacatattaataat 317  Q
    |||||||||| ||| |||||||    
T  3462805 tataatatgatataataataat 3462784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 23273887 - 23273823
Alignment:
Q  191 gtgtccagggctggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggt 255  Q
    |||| |||||| | |||||||||||||| | ||||||||||| ||||||| || | |||||||||    
T  23273887 gtgttcagggccgtcctaagggccaagcaacccaaacaagggttttaggcctcaaaattttgggt 23273823  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 44541843 - 44541887
Alignment:
Q  270 aaaataaatcaatttagctataagtatataatatgacatattaat 314  Q
    ||||||||||||||||  ||||| |||||||||||||||| ||||    
T  44541843 aaaataaatcaatttaattataaatatataatatgacatactaat 44541887  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 51879051 - 51879165
Alignment:
Q  203 ggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagtatataata 302  Q
    |||||||||||||||||| |||| |||||||||||||| || | ||||| ||||       |  || ||||||| ||||||||||||||| |||||||||    
T  51879051 ggcctaagggccaagccacccaagcaagggctttaggcctcaaaattttaggttaaaaaaagttttgaaaataagtcaatttagctataaatatataata 51879150  T
Q  303 tgacatattaataat 317  Q
    ||||||| |||||||    
T  51879151 tgacatactaataat 51879165  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 17112744 - 17112793
Alignment:
Q  34 gtcaaatattttgatttcaaatatattgaatacatatattttcataaata 83  Q
    |||||||||||||||||| |||  ||||| ||||||||||||||||||||    
T  17112744 gtcaaatattttgatttccaatgcattgattacatatattttcataaata 17112793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 9862020 - 9862061
Alignment:
Q  268 tcaaaataaatcaatttagctataagtatataatatgacata 309  Q
    |||||||||||||||||||| |||| ||| ||||||||||||    
T  9862020 tcaaaataaatcaatttagcaataaatatgtaatatgacata 9862061  T

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Target: scaffold0338 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 317
Target Start/End: Complemental strand, 18445 - 18336
Alignment:
Q  208 aagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagtatataatatgaca 307  Q
    |||||| ||||||  ||| |||| | ||||||| || ||||||||||||       ||| ||||||||| ||||||||||||||| ||||||||||||||    
T  18445 aagggctaagccactcaagcaagagttttaggcctcaagattttgggttaagaaaaggcctcaaaataagtcaatttagctataaatatataatatgaca 18346  T
Q  308 tattaataat 317  Q
    || |||||||    
T  18345 tactaataat 18336  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 2137225 - 2137295
Alignment:
Q  35 tcaaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggttcataaa 105  Q
    ||||||||||||||||  |||||||||| |||| |||||||||||||||||||| | ||||| ||| ||||    
T  2137225 tcaaatattttgatttataatatattgattacacatattttcataaatacttattacttatgattcttaaa 2137295  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 13136525 - 13136639
Alignment:
Q  203 ggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagtatataata 302  Q
    ||||||| |||||||||| ||||| ||||||||||||| || | || ||| |||       |||  |||||||| |||||||| |||||| |||||||||    
T  13136525 ggcctaaaggccaagccacccaaataagggctttaggcctccaaatgttgagttaaaaaaaggccccaaaataagtcaatttaactataaatatataata 13136624  T
Q  303 tgacatattaataat 317  Q
    ||||||| |||||||    
T  13136625 tgacatagtaataat 13136639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 49535840 - 49535788
Alignment:
Q  265 gcttcaaaataaatcaatttagctataagtatataatatgacatattaataat 317  Q
    |||||||||||| |||||||| |||||| |||||||||||||||| |||||||    
T  49535840 gcttcaaaataagtcaatttaactataaatatataatatgacatactaataat 49535788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 19145910 - 19146019
Alignment:
Q  207 taagggccaagccatccaaacaagggctttaggcttctagattttgggtt-nnnnnnnggcttcaaaataaatcaatttagctataagtatataatatga 305  Q
    |||||| ||||||| ||||||||||||||||||| || ||||||| ||||        ||| ||||||||| ||||||||||||||| ||||||  ||||    
T  19145910 taagggtcaagccacccaaacaagggctttaggcctcaagatttttggttaaaaaaaaggcctcaaaataagtcaatttagctataaatatata--atga 19146007  T
Q  306 catattaataat 317  Q
    |||| |||||||    
T  19146008 catactaataat 19146019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 50086475 - 50086405
Alignment:
Q  35 tcaaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggttcataaa 105  Q
    ||||||||||||||||  |||  |||||||||| |||||||||||||| |||| || |||| |||| ||||    
T  50086475 tcaaatattttgattttcaatgcattgaatacacatattttcataaatgcttaccacttatagttcttaaa 50086405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 50774985 - 50775071
Alignment:
Q  20 tattctctaaaacggtcaaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggttcataaaa 106  Q
    |||||| |||||  || ||||||||||||||  || ||||||| |||| ||||||||||||||| |||| | ||||| ||| |||||    
T  50774985 tattctttaaaaaagttaaatattttgattttcaacatattgattacacatattttcataaatatttattacttatgattcttaaaa 50775071  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 317
Target Start/End: Complemental strand, 17095686 - 17095564
Alignment:
Q  195 ccagggctggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagt 294  Q
    ||||||| |||||||||| ||||||| |||| |||||| | ||||| || ||||||||||||       |   | ||||||| |||||||| |||||| |    
T  17095686 ccagggccggcctaagggtcaagccacccaagcaagggttataggcctcaagattttgggttaagaaaagatcttaaaataagtcaatttacctataaat 17095587  T
Q  295 atataatatgacatattaataat 317  Q
    ||||||||||||||  |||||||    
T  17095586 atataatatgacatgctaataat 17095564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 317
Target Start/End: Complemental strand, 3956178 - 3956070
Alignment:
Q  208 aagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagtatataatatgaca 307  Q
    |||||| |||||| |||| |||||||||||||| || |||||||| |||       | || |||||||  | ||||||||||||| ||||||||||||||    
T  3956178 aagggctaagccacccaagcaagggctttaggcctccagattttgagttaaaaaaagcct-caaaatatgttaatttagctataaatatataatatgaca 3956080  T
Q  308 tattaataat 317  Q
    || |||||||    
T  3956079 tactaataat 3956070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 39568392 - 39568337
Alignment:
Q  37 aaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatt 92  Q
    ||||||||| ||||| ||| |||||||||||  |||||| ||||||||||||||||    
T  39568392 aaatattttaatttctaatgtattgaatacacttatttttataaatacttatcatt 39568337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 43585730 - 43585693
Alignment:
Q  203 ggcctaagggccaagccatccaaacaagggctttaggc 240  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  43585730 ggcctaagggccaagccacccaagcaagggctttaggc 43585693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 2270319 - 2270379
Alignment:
Q  39 atattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggtt 99  Q
    ||||||| | ||| |||||||| ||||||| |||||| ||||||||||  |||||||||||    
T  2270319 atattttaaattccaatatattaaatacatgtatttttataaatactttccatttatggtt 2270379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 3256695 - 3256631
Alignment:
Q  34 gtcaaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggt 98  Q
    ||||||| ||| |||||| |||  | |||||||| |||||||||||||||||||||| |||||||    
T  3256695 gtcaaatgtttcgatttccaatgcactgaatacacatattttcataaatacttatcacttatggt 3256631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 35874678 - 35874746
Alignment:
Q  37 aaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggttcataaa 105  Q
    ||||||||  ||||| |||||||| ||||||||||||||| ||||||||||  |||| |||||| ||||    
T  35874678 aaatatttcaatttctaatatattaaatacatatattttcgtaaatacttactatttgtggttcttaaa 35874746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 40065867 - 40065780
Alignment:
Q  18 agtattctctaaaacggtcaaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggttcataaa 105  Q
    |||||||| |||||  || ||||||||||||||  |||| || |||||||| |||||| ||||||||||| || ||||| ||| ||||    
T  40065867 agtattctttaaaaaagttaaatattttgattttcaatacatcgaatacatgtatttttataaatacttaccacttatgattcttaaa 40065780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 47025033 - 47024996
Alignment:
Q  280 aatttagctataagtatataatatgacatattaataat 317  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  47025033 aatttagctataaatatataatatgacatactaataat 47024996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 15494243 - 15494303
Alignment:
Q  196 cagggctggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggtt 256  Q
    |||||| |||||||||||||||||| | || | |||||||||||| || ||||||||||||    
T  15494243 cagggccggcctaagggccaagccaccaaagcgagggctttaggcctcaagattttgggtt 15494303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 305
Target Start/End: Complemental strand, 13278865 - 13278763
Alignment:
Q  203 ggcctaagggccaagccatccaaacaagggctttaggcttctagattttgggttnnnnnnnggcttcaaaataaatcaatttagctataagtatataata 302  Q
    |||||||||||||||| ||| || |||||||||||||| || ||||||| || |        |  ||||||||| |||||||| |||||| |||||||||    
T  13278865 ggcctaagggccaagctatcaaagcaagggctttaggcctcaagattttaggataaaaaaaagtctcaaaataagtcaatttaactataaatatataata 13278766  T
Q  303 tga 305  Q
    |||    
T  13278765 tga 13278763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 15573950 - 15573922
Alignment:
Q  289 ataagtatataatatgacatattaataat 317  Q
    |||||||||||||||||||||||||||||    
T  15573950 ataagtatataatatgacatattaataat 15573922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 189093 - 189171
Alignment:
Q  20 tattctctaaaacggtcaaatattttgatttcaaatatattgaatacatatattttcataaatacttatcatttatggt 98  Q
    |||||| |||||  || ||||||||  ||||| |||| ||| | |||| |||||||||||||||||||| |||||||||    
T  189093 tattctttaaaaaagttaaatatttctatttctaatacattaattacacatattttcataaatacttattatttatggt 189171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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