View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3816_low_6 (Length: 312)
Name: NF3816_low_6
Description: NF3816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3816_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 293
Target Start/End: Original strand, 54239771 - 54240061
Alignment:
| Q |
3 |
gatgtcgaagaatatacaagtgagaatactcatatactcaatgtgatgggcatgtttttagttaaaatttggtgtgcaagtcacttatgtgttgcacaaa |
102 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54239771 |
gatgttgaataatatacaaatgagaatactcatatactcaatgtgatgagcatgtttttagttaaaatttggtgtgcaagtcacttatgtgttgcacaaa |
54239870 |
T |
|
| Q |
103 |
gtcaaatgtgatgatccacccaaccttttaaggctcgttggaagtcttaatcatggtattgagtcttaataatggtattagattaataacgtagaaagtc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54239871 |
gtcaaatgtgatgatccacccaaccttttaaggctcgttggaagtcttaataatggtattgagtcttaataatggtattagattaataaagtagaaagtc |
54239970 |
T |
|
| Q |
203 |
tcatattgatggagacaatattgatgtatcaactatcaagtgtaagttaaaaatctcacatactatcaaaatgagtacttttacgcatttg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54239971 |
tcatattgatggagacaatattgatgtatcaactatcaagtgtaagttaaaaatctcacatactatcaaaatgagtacttttacgcatttg |
54240061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University