View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3816_low_8 (Length: 240)
Name: NF3816_low_8
Description: NF3816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3816_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 42463919 - 42463713
Alignment:
| Q |
20 |
gttgcttgcataagcacgagaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttcgatatgttgctgtttaagcagttgcta |
119 |
Q |
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| T |
42463919 |
gttgcttgcataagcacgagaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttagatatgttgctgtttaagcagttgcta |
42463820 |
T |
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| Q |
120 |
acaggaatatcaatgagtctatagttagctccaagaggaacagctggttttgctcgcttcttggtgagtggatatagacgagtaccagcaccacctccaa |
219 |
Q |
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| T |
42463819 |
acaggtatatcaatgagtctatagttagctccaagaggaacagctggttttgctctcttcttggtgagtggatatagacgagtaccagcaccacctccaa |
42463720 |
T |
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| Q |
220 |
gtataat |
226 |
Q |
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| T |
42463719 |
gtataat |
42463713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 37077941 - 37077778
Alignment:
| Q |
63 |
gaattgaattgagtaagaacatagatcttcgatatgttgctgtttaagcagttgctaacaggaatatcaatgagtctatagttagctccaagaggaacag |
162 |
Q |
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| T |
37077941 |
gaattgaattgtgtgaggacgtagatctttgatatgttactgtttaggcagttgctgacagggatatcaatcagcctatagtttgctccaagaggaacag |
37077842 |
T |
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| Q |
163 |
ctggttttgctcgcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataat |
226 |
Q |
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| T |
37077841 |
ctggttttgcccgcttcttggtcaatggataaagacgcgtcccggcaccccctccaagtataat |
37077778 |
T |
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