View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3817_high_1_N (Length: 508)
Name: NF3817_high_1_N
Description: NF3817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3817_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 7222403 - 7222115
Alignment:
| Q |
11 |
cagagacggaagaaggaccatcgctcggatgaacgaagaagggaggggtttgatgcagagaagggtcaaccgtaggaacatgagccaatctaggtggcat |
110 |
Q |
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| T |
7222403 |
cagagacggaagaaggaccatcgctcggatgaacgaagaagggtgtggtttgatgcagagaagggtcaaccgtaggaacatgagccaatctaggtggcat |
7222304 |
T |
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| Q |
111 |
tgcgatgaacgaaggcaaactgcgga---tcgctacacaacgaatgataccatgttaagatgaaaaaccacatatgagaataagaagaaggagaagattg |
207 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7222303 |
tgcgatgaacgaaggcaaactgcggaggatcgctacacaacgaatgataccatgttaagatgaaaaagcacatatgagaataagaagaaggagaagattg |
7222204 |
T |
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| Q |
208 |
aataaggaaaagtgtgattctcatagattgaattgtgagcttacaactaattatacaggaaaagtaagtgtgcacaagcgcatcacaca |
296 |
Q |
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| T |
7222203 |
aataaggaaaagtgggattctcatagattgaattgtgagcttacaactaattatataggaaaagtaagtgtgcacaagcgcatcacaca |
7222115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 363 - 508
Target Start/End: Complemental strand, 7222110 - 7221965
Alignment:
| Q |
363 |
aaagcacaaatgaagcataaccgatcaaaagatggaagaagaaacacaaactaataacaattcaacatagatagcagtaagatgataaagcaaaaatgat |
462 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
7222110 |
aaagcacaaatgatgcataaccgatcaaaagatggaagaagaaacacaaactaataacaactcaacatagatagcagcaagatgataaagcaaaaatgat |
7222011 |
T |
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| Q |
463 |
gagagtaatttgtcaatatatgaaagtctaactcacatgtacaata |
508 |
Q |
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| T |
7222010 |
gagagtaatttgtcaatatatgaaagtctaactcacatgtacaata |
7221965 |
T |
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